Fields »
ABOUT
HELP
BLOG
SLC38A1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:40.1TPM
GTEx:20.6RPKM
FANTOM5:52.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA052272

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

40.1
overview Male, age 54 Sample 1
TPM: 40.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 33.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 48.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 43.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 22.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 28.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 51.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 43.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 41.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 42.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 43.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 48.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 32.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

20.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 22.8
Samples: 149

Max RPKM: 39.9
Min RPKM: 5.2
Std RPKM: 7.3
Median RPKM: 22.1
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 39.9
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 38.5
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 37.8
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 37.7
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 37.6
GTEX-Y3I4-1126-SM-4TT7Y 50-59 years, male 37.3
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 36.8
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 36.1
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 35.3
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 34.6
Show all
Colon - Transverse
RPKM: 18.9
Samples: 196

Max RPKM: 48.7
Min RPKM: 3.7
Std RPKM: 5.3
Median RPKM: 18.4
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 48.7
GTEX-O5YW-1426-SM-3MJHF 50-59 years, male 32.7
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 30.5
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 29.0
GTEX-PWOO-1326-SM-48TCJ 40-49 years, female 28.9
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 28.3
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 28.2
GTEX-144GM-1226-SM-5LU52 20-29 years, male 28.2
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 28.1
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 28.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

52.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 52.2
FF:10014-101C5 62,83,84 years, mixed 52.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.