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COLON - Expression summary

RNA expression
HPA:9.3TPM
GTEx:6.2RPKM
FANTOM5:20.5Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA032093

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

9.3
overview Male, age 54 Sample 1
TPM: 9.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 6.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 8.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 8.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 8.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 11.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 11.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 12.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

6.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 6.2
Samples: 149

Max RPKM: 10.5
Min RPKM: 3.3
Std RPKM: 1.3
Median RPKM: 6.1
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 10.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 10.2
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 10.2
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 9.7
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 9.5
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 9.2
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 8.5
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 8.5
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 8.4
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 8.3
Show all
Colon - Transverse
RPKM: 6.1
Samples: 196

Max RPKM: 10.9
Min RPKM: 2.5
Std RPKM: 1.3
Median RPKM: 5.9
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 10.9
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 10.3
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 9.7
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 8.9
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 8.7
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 8.7
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 8.7
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 8.7
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 8.5
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 8.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

20.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 20.5
FF:10014-101C5 62,83,84 years, mixed 20.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.