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MSH3

COLON - Expression summary

RNA expression
HPA:6.5TPM
GTEx:2.4RPKM
FANTOM5:33.9Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

6.5
overview Male, age 54 Sample 1
TPM: 7.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 8.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 5.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 4.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 6.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 7.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 6.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 8.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 7.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 5.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.1
Samples: 149

Max RPKM: 3.8
Min RPKM: 1.0
Std RPKM: 0.5
Median RPKM: 2.1
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 3.8
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 3.7
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 3.5
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 3.5
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 3.4
GTEX-145LS-2926-SM-5O99G 60-69 years, female 3.3
GTEX-13111-1926-SM-5GCOL 50-59 years, male 3.2
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 3.2
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 3.2
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 3.0
Show all
Colon - Transverse
RPKM: 2.6
Samples: 196

Max RPKM: 4.3
Min RPKM: 0.7
Std RPKM: 0.6
Median RPKM: 2.5
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 4.3
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 4.1
GTEX-11P7K-1526-SM-5EGI7 30-39 years, male 3.9
GTEX-11VI4-1526-SM-5EQKC 40-49 years, female 3.9
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 3.8
GTEX-WFG7-1526-SM-4LVMG 20-29 years, male 3.8
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 3.7
GTEX-O5YW-1426-SM-3MJHF 50-59 years, male 3.7
GTEX-P4PP-1426-SM-3NM9L 30-39 years, female 3.7
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 3.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

33.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 33.9
FF:10014-101C5 62,83,84 years, mixed 33.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.