Tissue expression of ALMS1 - Staining in small intestine

SMALL INTESTINE - Expression summary

Protein expression

RNA expression

HPA:	1.5	TPM
GTEx:	1.6	RPKM
FANTOM5:	22.5	Tags Per Million

SMALL INTESTINE - Annotated protein expression

Annotated protein
expression

Glandular cells:

Low

Antibody staining	Antibody HPA043200
Glandular cells	High

SMALL INTESTINE - HPA RNA-seq

Average TPM	1.5

Male, age 65

Sample 1
TPM: 1.4

Cell types%

Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40

Male, age 39

Sample 2
TPM: 1.9

Cell types%

Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55

Male, age 68

Sample 3
TPM: 1.5

Cell types%

Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55

Male, age 85

Sample 4
TPM: 1.1

SMALL INTESTINE - GTEx RNA-seq

Average RPKM	1.6

GTEx sample id

Sample description

RPKM

Small Intestine - Terminal Ileum
RPKM: 1.6

Samples: 88

Max RPKM: 2.8
Min RPKM: 0.8
Std RPKM: 0.4
Median RPKM: 1.5

GTEX-148VJ-2226-SM-5NQ9M

70-79 years, male

2.8

GTEX-145ME-0926-SM-5O9AR

40-49 years, female

2.5

GTEX-11VI4-1626-SM-5EQKO

40-49 years, female

2.3

GTEX-131XG-1726-SM-5LZUR

50-59 years, female

2.3

GTEX-13O21-1026-SM-5IJDU

50-59 years, male

2.3

GTEX-WEY5-1526-SM-4LMJF

40-49 years, female

2.3

GTEX-13111-1426-SM-5DUW3

50-59 years, male

2.2

GTEX-13O61-1326-SM-5KM31

60-69 years, male

2.2

GTEX-ZC5H-2326-SM-4WAYT

40-49 years, female

2.2

GTEX-ZQUD-0926-SM-57WE3

30-39 years, male

2.2

Show all

SMALL INTESTINE - FANTOM5 CAGE

Average Tags Per Million	22.5

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 22.5

FF:10024-101D6

15,40,85 years, mixed

22.5