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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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ELOVL3
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    TISSUE

  • CELL

  • PATHOLOGY

PATHOLOGY ATLAS

GENE/PROTEIN

Antibody validation

Dictionary

Level of antibody staining/expression





High
Medium
Low
Not detected

GENERAL INFORMATION

Gene name

ELOVL3

Gene description

ELOVL fatty acid elongase 3

Protein class

Enzymes
Predicted membrane proteins

Predicted localization

Membrane

Number of transcripts

1
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HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):Tissue enhanced (testis cancer)
HPA (cell line):Cell line enhanced (SiHa)
HPA (normal tissue):Tissue enhanced (adipose tissue, breast, skin)

Protein evidence

Evidence at protein level

Protein expression
normal tissue

Highly expressed in sebaceous glands.

ANTIBODY IHC RELIABILITY

Data reliability
description

Antibody staining consistent with RNA expression data. External characterization data supports antibody staining.

Reliability score

Supported based on 1 antibody.
HPA036236
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PROGNOSTIC SUMMARY

Prognostic marker in endometrial cancer (unfavourable).
Endometrial cancer p<0.001
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RNA EXPRESSION OVERVIEW

TCGA dataset
RNA cancer category: Tissue enhanced (testis cancer)

PROTEIN EXPRESSION

Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer

STAINING SUMMARY

HPA036236

Cancer

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Cancer

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

All cancer cells were negative.

GENE INFORMATION

Gene name

ELOVL3 (HGNC Symbol)

Synonyms

CIG-30

Description

ELOVL fatty acid elongase 3 (HGNC Symbol)

Entrez gene summary

This gene encodes a protein that belongs to the GNS1/SUR4 family. Members of this family play a role in elongation of long chain fatty acids to provide precursors for synthesis of sphingolipids and ceramides. [provided by RefSeq, Jul 2013]

Chromosome

10

Cytoband

q24.32

Chromosome location (bp)

102226328 - 102229589

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000119915 (version 83.38)

Entrez gene

83401

UniProt

Q9HB03 (UniProt - Evidence at protein level)

neXtProt

NX_Q9HB03

Antibodypedia

ELOVL3 antibodies

PROTEIN BROWSER

ELOVL3-001

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

ELOVL3-001
ENSP00000359022
ENST00000370005
Q9HB03 [Direct mapping]
Elongation of very long chain fatty acids protein 3
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Enzymes
   ENZYME proteins
   Transferases
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   7TM proteins predicted by MDM
Show all
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006636 [unsaturated fatty acid biosynthetic process]
GO:0016021 [integral component of membrane]
GO:0016740 [transferase activity]
GO:0019367 [fatty acid elongation, saturated fatty acid]
GO:0019432 [triglyceride biosynthetic process]
GO:0033559 [unsaturated fatty acid metabolic process]
GO:0034625 [fatty acid elongation, monounsaturated fatty acid]
GO:0034626 [fatty acid elongation, polyunsaturated fatty acid]
GO:0035338 [long-chain fatty-acyl-CoA biosynthetic process]
GO:0036109 [alpha-linolenic acid metabolic process]
GO:0042761 [very long-chain fatty acid biosynthetic process]
GO:0043651 [linoleic acid metabolic process]
GO:0044255 [cellular lipid metabolic process]
GO:0044281 [small molecule metabolic process]
Show all
270 aa
31.5 kDa
No 7

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