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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
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TRIM25
  • TISSUE

  • CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

TRIM25

Gene description

Tripartite motif containing 25

Protein class

Cancer-related genes
Enzymes
Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

2
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General cytoplasmic expression.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Approved based on 1 antibody.
HPA005909
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
N/A
Female tissues
Breast
Vagina
N/A
Cervix, uterine
N/A
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

TRIM25 (HGNC Symbol)

Synonyms

EFP, RNF147, ZNF147

Description

Tripartite motif containing 25 (HGNC Symbol)

Entrez gene summary

The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. The protein localizes to the cytoplasm. The presence of potential DNA-binding and dimerization-transactivation domains suggests that this protein may act as a transcription factor, similar to several other members of the TRIM family. Expression of the gene is upregulated in response to estrogen, and it is thought to mediate estrogen actions in breast cancer as a primary response gene. [provided by RefSeq, Jul 2008]

Chromosome

17

Cytoband

q22

Chromosome location (bp)

56887909 - 56914038

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000121060 (version 83.38)

Entrez gene

7706

UniProt

Q14258 (UniProt - Evidence at protein level)

neXtProt

NX_Q14258

Antibodypedia

TRIM25 antibodies

PROTEIN BROWSER

TRIM25-001
TRIM25-201

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

TRIM25-001
ENSP00000323889
ENST00000316881
Q14258 [Direct mapping]
E3 ubiquitin/ISG15 ligase TRIM25
Show all
Enzymes
   ENZYME proteins
   Transferases
   Ligase
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003700 [transcription factor activity, sequence-specific DNA binding]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006281 [DNA repair]
GO:0006513 [protein monoubiquitination]
GO:0008270 [zinc ion binding]
GO:0016032 [viral process]
GO:0016881 [acid-amino acid ligase activity]
GO:0019221 [cytokine-mediated signaling pathway]
GO:0019985 [translesion synthesis]
GO:0032480 [negative regulation of type I interferon production]
GO:0036503 [ERAD pathway]
GO:0042787 [protein ubiquitination involved in ubiquitin-dependent protein catabolic process]
GO:0043123 [positive regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043627 [response to estrogen]
GO:0044822 [poly(A) RNA binding]
GO:0045087 [innate immune response]
GO:0046596 [regulation of viral entry into host cell]
GO:0046597 [negative regulation of viral entry into host cell]
GO:0051091 [positive regulation of sequence-specific DNA binding transcription factor activity]
GO:0051092 [positive regulation of NF-kappaB transcription factor activity]
GO:0051607 [defense response to virus]
GO:0060333 [interferon-gamma-mediated signaling pathway]
GO:1902186 [regulation of viral release from host cell]
GO:1902187 [negative regulation of viral release from host cell]
GO:1904264 [ubiquitin protein ligase activity involved in ERAD pathway]
Show all
630 aa
71 kDa
No 0
TRIM25-201
ENSP00000445961
ENST00000537230
Q14258 [Direct mapping]
E3 ubiquitin/ISG15 ligase TRIM25
Show all
Enzymes
   ENZYME proteins
   Transferases
   Ligase
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003700 [transcription factor activity, sequence-specific DNA binding]
GO:0005515 [protein binding]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006281 [DNA repair]
GO:0006513 [protein monoubiquitination]
GO:0008270 [zinc ion binding]
GO:0016032 [viral process]
GO:0016881 [acid-amino acid ligase activity]
GO:0019221 [cytokine-mediated signaling pathway]
GO:0019985 [translesion synthesis]
GO:0032480 [negative regulation of type I interferon production]
GO:0036503 [ERAD pathway]
GO:0042787 [protein ubiquitination involved in ubiquitin-dependent protein catabolic process]
GO:0043123 [positive regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043627 [response to estrogen]
GO:0044822 [poly(A) RNA binding]
GO:0045087 [innate immune response]
GO:0046596 [regulation of viral entry into host cell]
GO:0051091 [positive regulation of sequence-specific DNA binding transcription factor activity]
GO:0051092 [positive regulation of NF-kappaB transcription factor activity]
GO:0051607 [defense response to virus]
GO:0060333 [interferon-gamma-mediated signaling pathway]
GO:1902186 [regulation of viral release from host cell]
GO:1904264 [ubiquitin protein ligase activity involved in ERAD pathway]
Show all
630 aa
71 kDa
No 0

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