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POPDC2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:8.7TPM
GTEx:57.2RPKM
FANTOM5:10.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA024255

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

8.7
overview Male, age 54 Sample 1
TPM: 4.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 55.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 23.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 6.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 9.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

57.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 92.4
Samples: 149

Max RPKM: 182.7
Min RPKM: 27.6
Std RPKM: 30.1
Median RPKM: 91.4
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 182.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 177.7
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 156.5
GTEX-ZY6K-1326-SM-5GZWP 50-59 years, male 155.1
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 154.4
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 148.2
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 145.0
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 143.3
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 141.4
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 138.0
Show all
Colon - Transverse
RPKM: 30.5
Samples: 196

Max RPKM: 187.9
Min RPKM: 0.7
Std RPKM: 32.6
Median RPKM: 18.8
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 187.9
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 120.4
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 117.6
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 108.0
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 104.1
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 101.7
GTEX-13VXT-2426-SM-5LU46 20-29 years, female 98.0
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 93.5
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 93.1
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 88.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

10.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 10.3
FF:10014-101C5 62,83,84 years, mixed 10.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.