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COLON - Expression summary

RNA expression
HPA:20.1TPM
GTEx:8.7RPKM
FANTOM5:65.6Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

20.1
overview Male, age 54 Sample 1
TPM: 21.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 17.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 17.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 19.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 21.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 18.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 19
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 22.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 18.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 21
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 28.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 14.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 10.5
Samples: 149

Max RPKM: 18.1
Min RPKM: 7.0
Std RPKM: 1.6
Median RPKM: 10.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 18.1
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 15.1
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 13.9
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 13.7
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 13.5
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 13.4
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 13.2
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 13.2
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 13.0
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 12.9
Show all
Colon - Transverse
RPKM: 7.3
Samples: 196

Max RPKM: 15.7
Min RPKM: 3.3
Std RPKM: 2.7
Median RPKM: 6.4
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 15.7
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 13.6
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 13.3
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 13.1
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 13.1
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 12.8
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 12.7
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 12.7
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 12.6
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 12.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

65.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 65.6
FF:10014-101C5 62,83,84 years, mixed 65.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.