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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:3.2TPM
GTEx:0.6RPKM
FANTOM5:4.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA002461

  

Antibody HPA003887

  

Antibody CAB025358

  

Endothelial cells

 Not detected   Medium   Not detected  

Glandular cells

 Not detected   Not detected   Not detected  

Peripheral nerve/ganglion

 Low   Not detected  
     
     

COLON - HPA RNA-seq

Average TPM

3.2
overview Male, age 54 Sample 1
TPM: 5.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 0.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 3.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 4.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.1
Samples: 149

Max RPKM: 1.6
Min RPKM: 0.0
Std RPKM: 0.1
Median RPKM: 0.1
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 1.6
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 0.6
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 0.5
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 0.5
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 0.4
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 0.4
GTEX-1211K-1826-SM-5EGJ2 60-69 years, female 0.4
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 0.4
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 0.4
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 0.4
Show all
Colon - Transverse
RPKM: 1.0
Samples: 196

Max RPKM: 5.0
Min RPKM: 0.0
Std RPKM: 0.8
Median RPKM: 0.8
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 5.0
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 3.7
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 3.7
GTEX-UPIC-1726-SM-4IHKG 20-29 years, female 3.4
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 3.1
GTEX-XMK1-1726-SM-4B64Z 40-49 years, male 3.1
GTEX-Q2AH-1226-SM-48TZL 40-49 years, male 3.0
GTEX-ZVP2-1526-SM-5NQ82 50-59 years, male 2.9
GTEX-XBED-1526-SM-4AT5W 60-69 years, male 2.7
GTEX-13FTW-1826-SM-5IJEN 40-49 years, male 2.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

4.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 4.9
FF:10014-101C5 62,83,84 years, mixed 4.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.