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Term
Gene name

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In atlas

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NRN1
  • TISSUE

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PATHOLOGY ATLAS

GENE/PROTEIN

Dictionary

GENERAL INFORMATION

Gene name

NRN1

Gene description

Neuritin 1

Protein class

Predicted membrane proteins

Predicted localization

Membrane

Number of transcripts

3
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):Expressed in all
HPA (cell line):Cell line enhanced (REH)
HPA (normal tissue):Tissue enhanced (cerebral cortex)

Protein evidence

Evidence at protein level

ANTIBODY IHC RELIABILITY

Reliability score

Pending cancer tissue analysis.

PROGNOSTIC SUMMARY

Prognostic marker in renal cancer (unfavourable).
0.00.10.20.30.40.50.60.70.80.91.0 0 1 2 3 4 5 6 7 8 910111213141516 Renal cancer p<0.001
Show all

RNA EXPRESSION OVERVIEW

TCGA dataset
RNA cancer category: Expressed in all
0.020406080100120140160180200FPKMBreast cancer (BRCA)Cervical cancer (CESC)Colorectal cancer (COAD,READ)Endometrial cancer (UCEC)Glioma (GBM)Head and neck cancer (HNSC)Liver cancer (LIHC)Lung cancer (LUAD,LUSC)Melanoma (SKCM)Ovarian cancer (OV)Pancreatic cancer (PAAD)Prostate cancer (PRAD)Renal cancer (KICH,KIRC,KIRP)Stomach cancer (STAD)Testis cancer (TGCT)Thyroid cancer (THCA)Urothelial cancer (BLCA)

PROTEIN EXPRESSION

Pending cancer tissue analysis


STAINING SUMMARY

 

GENE INFORMATION

Gene name

NRN1 (HGNC Symbol)

Synonyms

NRN

Description

Neuritin 1 (HGNC Symbol)

Entrez gene summary

This gene encodes a member of the neuritin family, and is expressed in postmitotic-differentiating neurons of the developmental nervous system and neuronal structures associated with plasticity in the adult. The expression of this gene can be induced by neural activity and neurotrophins. The encoded protein contains a consensus cleavage signal found in glycosylphoshatidylinositol (GPI)-anchored proteins. The encoded protein promotes neurite outgrowth and arborization, suggesting its role in promoting neuritogenesis. Overexpression of the encoded protein may be associated with astrocytoma progression. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

Chromosome

6

Cytoband

p25.1

Chromosome location (bp)

5997999 - 6007605

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000124785 (version 83.38)

Entrez gene

51299

UniProt

Q9NPD7 (UniProt - Evidence at transcript level)

neXtProt

NX_Q9NPD7

Antibodypedia

NRN1 antibodies

PROTEIN BROWSER

NRN1-001
NRN1-201
NRN1-202

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

NRN1-001
ENSP00000244766
ENST00000244766
Q9NPD7 [Direct mapping]
Neuritin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Kim et al 2014)
Show all
GO:0005886 [plasma membrane]
GO:0007399 [nervous system development]
GO:0030054 [cell junction]
GO:0031225 [anchored component of membrane]
GO:0045202 [synapse]
Show all
142 aa
15.3 kDa
Yes 1
NRN1-201
ENSP00000484055
ENST00000616243
Q9NPD7 [Direct mapping]
Neuritin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Show all
GO:0005886 [plasma membrane]
GO:0007399 [nervous system development]
GO:0030054 [cell junction]
GO:0031225 [anchored component of membrane]
GO:0045202 [synapse]
Show all
142 aa
15.3 kDa
Yes 1
NRN1-202
ENSP00000480483
ENST00000622188
A0A087WWT2 [Direct mapping]
Neuritin
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Show all
GO:0007399 [nervous system development]
GO:0032281 [AMPA glutamate receptor complex]
Show all
168 aa
18.1 kDa
No 1

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