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SOX9

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.4TPM
GTEx:6.0RPKM
FANTOM5:39.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Glandular cells:High
Endothelial cells:Not available
Peripheral nerve/ganglion:Not available
 

Antibody staining

Antibody HPA001758

  

Antibody CAB022456

  

Antibody CAB068240

  

Glandular cells

 Medium   High   High  

Endothelial cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
     
     

COLON - HPA RNA-seq

Average TPM

17.4
overview Male, age 54 Sample 1
TPM: 35.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 17.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 34.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 12.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 16.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 15.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 15.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 15.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 11.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

6.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.6
Samples: 149

Max RPKM: 8.9
Min RPKM: 0.0
Std RPKM: 1.1
Median RPKM: 0.3
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 8.9
GTEX-XBED-1726-SM-47JYO 60-69 years, male 6.7
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 5.9
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 5.6
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 4.5
GTEX-V955-1726-SM-4JBHF 60-69 years, male 3.1
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 2.9
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 2.4
GTEX-13111-1926-SM-5GCOL 50-59 years, male 2.1
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 1.9
Show all
Colon - Transverse
RPKM: 10.0
Samples: 196

Max RPKM: 58.9
Min RPKM: 0.1
Std RPKM: 8.5
Median RPKM: 9.7
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 58.9
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 34.3
GTEX-13S86-1626-SM-5Q5C5 40-49 years, male 30.0
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 27.4
GTEX-11P82-1026-SM-5BC5J 20-29 years, male 27.2
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 26.6
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 26.6
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 25.2
GTEX-132AR-2726-SM-5PNVN 50-59 years, female 24.6
GTEX-11I78-1226-SM-5A5K6 50-59 years, female 23.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

39.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 39.2
FF:10014-101C5 62,83,84 years, mixed 39.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.