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PPDPF

COLON - Expression summary

RNA expression
HPA:145.4TPM
GTEx:162.3RPKM
FANTOM5:672.8Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

145.4
overview Male, age 54 Sample 1
TPM: 307.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 177.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 196.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 373.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 74.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 78.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 54.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 76.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 71.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 118.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 94.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 121
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 145.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

162.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 142.6
Samples: 149

Max RPKM: 446.6
Min RPKM: 42.8
Std RPKM: 66.3
Median RPKM: 125.5
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 446.6
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 385.8
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 321.5
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 312.7
GTEX-11EMC-1426-SM-5N9E4 60-69 years, female 267.4
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 267.4
GTEX-139TS-2226-SM-5J2N1 60-69 years, male 265.3
GTEX-14A5I-2426-SM-5Q5CP 50-59 years, female 259.5
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 254.2
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 251.7
Show all
Colon - Transverse
RPKM: 177.2
Samples: 196

Max RPKM: 396.2
Min RPKM: 35.4
Std RPKM: 64.6
Median RPKM: 176.9
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 396.2
GTEX-WOFM-2026-SM-4OOSQ 20-29 years, male 370.2
GTEX-R55G-1226-SM-48FDC 40-49 years, female 326.5
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 322.8
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 313.7
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 310.3
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 300.6
GTEX-XQ8I-2126-SM-4BOOM 50-59 years, male 288.3
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 286.9
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 280.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

672.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 672.8
FF:10014-101C5 62,83,84 years, mixed 672.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.