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ACTN4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:75.2TPM
GTEx:88.1RPKM
FANTOM5:199.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA001873

  

Antibody HPA006035

  

Endothelial cells

 High   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 High   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

75.2
overview Male, age 54 Sample 1
TPM: 69.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 101.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 116.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 105.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 64.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 60.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 44.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 72
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 55.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 70.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 78.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 76.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 61.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

88.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 64.7
Samples: 149

Max RPKM: 189.4
Min RPKM: 25.0
Std RPKM: 23.8
Median RPKM: 59.5
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 189.4
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 135.0
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 132.4
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 129.3
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 124.7
GTEX-ZQG8-2426-SM-57WEE 60-69 years, female 123.2
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 114.7
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 113.1
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 107.0
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 100.7
Show all
Colon - Transverse
RPKM: 105.8
Samples: 196

Max RPKM: 235.8
Min RPKM: 41.6
Std RPKM: 37.0
Median RPKM: 103.7
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 235.8
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 219.9
GTEX-144GM-1226-SM-5LU52 20-29 years, male 218.6
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 215.7
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 195.9
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 192.7
GTEX-XAJ8-0426-SM-47JYJ 40-49 years, male 177.9
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 176.5
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 175.1
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 166.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

199.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 199.2
FF:10014-101C5 62,83,84 years, mixed 199.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.