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SSBP4

COLON - Expression summary

RNA expression
HPA:12.2TPM
GTEx:16.0RPKM
FANTOM5:14.9Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

12.2
overview Male, age 54 Sample 1
TPM: 22.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 19.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 22.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 24.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 20.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 4.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 3.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 11.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 9.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

16.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 18.0
Samples: 149

Max RPKM: 34.9
Min RPKM: 8.8
Std RPKM: 5.7
Median RPKM: 16.8
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 34.9
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 32.6
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 32.4
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 32.3
GTEX-ZC5H-2426-SM-4WAZ6 40-49 years, female 31.8
GTEX-13FHO-2726-SM-5K7VG 60-69 years, male 31.3
GTEX-12ZZX-2726-SM-5N9FT 40-49 years, female 30.8
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 29.8
GTEX-X15G-1526-SM-4PQZM 50-59 years, female 29.0
GTEX-145LS-2926-SM-5O99G 60-69 years, female 28.7
Show all
Colon - Transverse
RPKM: 14.5
Samples: 196

Max RPKM: 29.3
Min RPKM: 6.6
Std RPKM: 4.7
Median RPKM: 13.7
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 29.3
GTEX-1339X-1626-SM-5IJDN 40-49 years, male 28.2
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 27.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 26.5
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 26.4
GTEX-XV7Q-2126-SM-4BRVX 40-49 years, female 25.8
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 25.7
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 24.8
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 24.7
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 24.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

14.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 14.9
FF:10014-101C5 62,83,84 years, mixed 14.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.