Tissue expression of FIBCD1 - Summary - The Human Protein Atlas

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FIBCD1

TISSUE

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CELL

PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	FIBCD1
Gene description	Fibrinogen C domain containing 1
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	5
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Tissue enhanced (adrenal gland, parathyroid gland, testis)
GTEx:	Group enriched (adrenal gland, hippocampus, testis)
FANTOM5:	Tissue enhanced (testis)

Protein evidence

Evidence at protein level

Protein expression

Estimation of protein expression could not be performed. View primary data.

DATA RELIABILITY
Data reliability description	RNA-based expert annotation gave inconclusive results. Pending external verification.
Reliability score	Uncertain based on 2 antibodies. HPA053898 , HPA055353
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

N/A

Caudate

N/A

N/A

Cerebellum

N/A

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

N/A

Bronchus

N/A

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

N/A

Skin

N/A

Skin

N/A

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
RNA-based expert annotation could not be performed, due to inconclusive results. View immunohistochemistry primary data.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (adrenal gland, parathyroid gland, testis)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Group enriched (adrenal gland, hippocampus, testis)
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (testis)

GENE INFORMATION
Gene name	FIBCD1 (HGNC Symbol)
Synonyms	FLJ14810
Description	Fibrinogen C domain containing 1 (HGNC Symbol)
Entrez gene summary	FIBCD1 is a conserved type II transmembrane endocytic receptor that binds chitin and is located primarily in the intestinal brush border (Schlosser et al., 2009 [PubMed 19710473]).[supplied by OMIM, Apr 2010]
Chromosome	9
Cytoband	q34.12
Chromosome location (bp)	130902438 - 130939286
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000130720 (version 83.38)
Entrez gene	84929
UniProt	Q8N539 (UniProt - Evidence at protein level)
neXtProt	NX_Q8N539
Antibodypedia	FIBCD1 antibodies

PROTEIN BROWSER

FIBCD1-001	FIBCD1-002	FIBCD1-003	FIBCD1-004	FIBCD1-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
FIBCD1-001 ENSP00000361413 ENST00000372338	Q8N539 [Direct mapping] Fibrinogen C domain-containing protein 1 Show all	MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Protein evidence (Kim et al 2014) Show all	GO:0005515 [protein binding] GO:0008061 [chitin binding] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0046872 [metal ion binding] Show all	461 aa 50.7 kDa	No	0
FIBCD1-002 ENSP00000361412 ENST00000372337	A3KFJ8 [Direct mapping] Fibrinogen C domain-containing protein 1 Show all	Predicted intracellular proteins Show all		303 aa 33.9 kDa	No	0
FIBCD1-003 ENSP00000395319 ENST00000444139	H0Y4Y8 [Direct mapping] Fibrinogen C domain-containing protein 1 Show all	Predicted intracellular proteins Show all		310 aa 33.3 kDa	No	0
FIBCD1-004 ENSP00000393894 ENST00000451466	X6RDH7 [Direct mapping] Fibrinogen C domain-containing protein 1 Show all	MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Show all	GO:0016021 [integral component of membrane] Show all	289 aa 31.1 kDa	No	0
FIBCD1-201 ENSP00000414501 ENST00000448616	Q8N539 [Direct mapping] Fibrinogen C domain-containing protein 1 Show all	MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Protein evidence (Kim et al 2014) Show all	GO:0005515 [protein binding] GO:0008061 [chitin binding] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0046872 [metal ion binding] Show all	461 aa 50.7 kDa	No	0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.