Expression of ZCCHC9 in cancer - Summary - The Human Protein Atlas

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ZCCHC9

TISSUE

CELL

PATHOLOGY

PATHOLOGY ATLAS

GENE/PROTEIN

Antibody validation

Dictionary


Level of antibody staining/expression
	High Medium Low Not detected

GENERAL INFORMATION
Gene name	ZCCHC9
Gene description	Zinc finger, CCHC domain containing 9
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	4
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HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):	Expressed in all
HPA (cell line):	Expressed in all
HPA (normal tissue):	Expressed in all

Protein evidence

Evidence at protein level

Protein expression
normal tissue

Cytoplasmic expression in most tissues.

ANTIBODY IHC RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data. Pending external verification.
Reliability score	Uncertain based on 1 antibody. HPA038404
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PROGNOSTIC SUMMARY
Gene product is not prognostic.
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RNA EXPRESSION OVERVIEW
TCGA dataset RNA cancer category: Expressed in all

PROTEIN EXPRESSION

Colorectal cancer

Prostate cancer

STAINING SUMMARY

HPA038404

GENE INFORMATION
Gene name	ZCCHC9 (HGNC Symbol)
Synonyms	DKFZp761J139, PPP1R41
Description	Zinc finger, CCHC domain containing 9 (HGNC Symbol)
Entrez gene summary
Chromosome	5
Cytoband	q14.1
Chromosome location (bp)	81301590 - 81313297
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000131732 (version 83.38)
Entrez gene	84240
UniProt	Q8N567 (UniProt - Evidence at transcript level)
neXtProt	NX_Q8N567
Antibodypedia	ZCCHC9 antibodies

PROTEIN BROWSER

ZCCHC9-001	ZCCHC9-002	ZCCHC9-003	ZCCHC9-004

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
ZCCHC9-001 ENSP00000254037 ENST00000254037	Q8N567 [Direct mapping] Zinc finger CCHC domain-containing protein 9 A0A024RAL5 [Target identity:100%; Query identity:100%] Zinc finger, CCHC domain containing 9, isoform CRA_a Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0005730 [nucleolus] GO:0006351 [transcription, DNA-templated] GO:0008270 [zinc ion binding] GO:0010923 [negative regulation of phosphatase activity] GO:0044822 [poly(A) RNA binding] Show all	271 aa 30.5 kDa	No	0
ZCCHC9-002 ENSP00000385047 ENST00000407610	Q8N567 [Direct mapping] Zinc finger CCHC domain-containing protein 9 A0A024RAL5 [Target identity:100%; Query identity:100%] Zinc finger, CCHC domain containing 9, isoform CRA_a Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0005730 [nucleolus] GO:0006351 [transcription, DNA-templated] GO:0008270 [zinc ion binding] GO:0010923 [negative regulation of phosphatase activity] GO:0044822 [poly(A) RNA binding] Show all	271 aa 30.5 kDa	No	0
ZCCHC9-003 ENSP00000369546 ENST00000380199	Q8N567 [Direct mapping] Zinc finger CCHC domain-containing protein 9 A0A024RAL5 [Target identity:100%; Query identity:100%] Zinc finger, CCHC domain containing 9, isoform CRA_a Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0005730 [nucleolus] GO:0006351 [transcription, DNA-templated] GO:0008270 [zinc ion binding] GO:0010923 [negative regulation of phosphatase activity] GO:0044822 [poly(A) RNA binding] Show all	271 aa 30.5 kDa	No	0
ZCCHC9-004 ENSP00000412637 ENST00000438268	Q8N567 [Direct mapping] Zinc finger CCHC domain-containing protein 9 A0A024RAL5 [Target identity:100%; Query identity:100%] Zinc finger, CCHC domain containing 9, isoform CRA_a Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0003676 [nucleic acid binding] GO:0005730 [nucleolus] GO:0006351 [transcription, DNA-templated] GO:0008270 [zinc ion binding] GO:0010923 [negative regulation of phosphatase activity] GO:0044822 [poly(A) RNA binding] Show all	271 aa 30.5 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.