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Gene name

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Reliability

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Validation

Method

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Specificity

Cell line

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Cancer

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Detectable

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Detectable

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AP3B1
  • TISSUE

  • CELL

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

AP3B1

Gene description

Adaptor-related protein complex 3, beta 1 subunit

Protein class

Disease related genes
Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

3
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic and/or nuclear expression in most tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data.

Reliability score

Approved based on 1 antibody.
HPA038737
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical
Cerebral cortexHippocampusCaudateCerebellumThyroid glandParathyroid glandAdrenal glandAppendixBone marrowLymph nodeTonsilSpleenHeart muscleSkeletal muscleSmooth muscleNasopharynxBronchusLungLiverGallbladderPancreasOral mucosaSalivary glandEsophagusStomachDuodenumSmall intestineColonRectumKidneyUrinary bladderTestisEpididymisProstateSeminal vesicleBreastVaginaCervix, uterineEndometriumFallopian tubeOvaryPlacentaAdipose tissueSoft tissueSkinNotdetectedLowMediumHighSCORE

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
Cerebral cortexThyroid glandParathyroid glandAdrenal glandAppendixBone marrowLymph nodeTonsilSpleenHeart muscleSkeletal muscleSmooth muscleLungLiverGallbladderPancreasSalivary glandEsophagusStomachDuodenumSmall intestineColonRectumKidneyUrinary bladderTestisEpididymisProstateSeminal vesicleBreastCervix, uterineEndometriumFallopian tubeOvaryPlacentaAdipose tissueSkin010203040506070TPM
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
HypothalamusPituitary glandCerebral cortexHippocampusCaudateCerebellumThyroid glandAdrenal glandSpleenHeart muscleSkeletal muscleLungLiverPancreasSalivary glandEsophagusStomachSmall intestineColonKidneyUrinary bladderTestisProstateBreastVaginaCervix, uterineEndometriumFallopian tubeOvaryAdipose tissueSkin02468101214RPKM
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
Pituitary glandBrainHippocampusCaudateCerebellumThyroid glandAppendixLymph nodeTonsilSpleenHeart muscleSkeletal muscleSmooth muscleLungLiverGallbladderPancreasSalivary glandEsophagusSmall intestineColonKidneyUrinary bladderTestisEpididymisProstateSeminal vesicleBreastVaginaCervix, uterineEndometriumOvaryPlacentaAdipose tissueRetina050100150200Tags Per Million

GENE INFORMATION

Gene name

AP3B1 (HGNC Symbol)

Synonyms

ADTB3A, HPS2

Description

Adaptor-related protein complex 3, beta 1 subunit (HGNC Symbol)

Entrez gene summary

This gene encodes a protein that may play a role in organelle biogenesis associated with melanosomes, platelet dense granules, and lysosomes. The encoded protein is part of the heterotetrameric AP-3 protein complex which interacts with the scaffolding protein clathrin. Mutations in this gene are associated with Hermansky-Pudlak syndrome type 2. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2012]

Chromosome

5

Cytoband

q14.1

Chromosome location (bp)

78000525 - 78294755

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000132842 (version 83.38)

Entrez gene

8546

UniProt

O00203 (UniProt - Evidence at protein level)

neXtProt

NX_O00203

Antibodypedia

AP3B1 antibodies

PROTEIN BROWSER

AP3B1-001
AP3B1-002
AP3B1-007

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

AP3B1-001
ENSP00000255194
ENST00000255194
O00203 [Direct mapping]
AP-3 complex subunit beta-1
Show all
   MEMSAT3 predicted membrane proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005488 [binding]
GO:0005765 [lysosomal membrane]
GO:0005794 [Golgi apparatus]
GO:0006622 [protein targeting to lysosome]
GO:0006886 [intracellular protein transport]
GO:0007596 [blood coagulation]
GO:0008089 [anterograde axon cargo transport]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0019882 [antigen processing and presentation]
GO:0019903 [protein phosphatase binding]
GO:0030117 [membrane coat]
GO:0030123 [AP-3 adaptor complex]
GO:0030131 [clathrin adaptor complex]
GO:0030665 [clathrin-coated vesicle membrane]
GO:0030742 [GTP-dependent protein binding]
GO:0032438 [melanosome organization]
GO:0048007 [antigen processing and presentation, exogenous lipid antigen via MHC class Ib]
GO:0048490 [anterograde synaptic vesicle transport]
GO:0051138 [positive regulation of NK T cell differentiation]
Show all
1094 aa
121.3 kDa
No 0
AP3B1-002
ENSP00000430597
ENST00000519295
O00203 [Direct mapping]
AP-3 complex subunit beta-1
Show all
   MEMSAT3 predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005488 [binding]
GO:0005765 [lysosomal membrane]
GO:0005794 [Golgi apparatus]
GO:0006886 [intracellular protein transport]
GO:0008089 [anterograde axon cargo transport]
GO:0016020 [membrane]
GO:0016192 [vesicle-mediated transport]
GO:0019903 [protein phosphatase binding]
GO:0030117 [membrane coat]
GO:0030123 [AP-3 adaptor complex]
GO:0030131 [clathrin adaptor complex]
GO:0030665 [clathrin-coated vesicle membrane]
GO:0030742 [GTP-dependent protein binding]
GO:0032438 [melanosome organization]
GO:0048490 [anterograde synaptic vesicle transport]
Show all
1045 aa
116.2 kDa
No 0
AP3B1-007
ENSP00000429228
ENST00000522901
H0YBD0 [Direct mapping]
AP-3 complex subunit beta-1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0016192 [vesicle-mediated transport]
Show all
154 aa
16.8 kDa
No 0

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