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Gene name

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In atlas

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Reliability

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Method

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RFXAP
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PATHOLOGY ATLAS

GENE/PROTEIN

Dictionary

GENERAL INFORMATION

Gene name

RFXAP

Gene description

Regulatory factor X-associated protein

Protein class

Disease related genes
Predicted intracellular proteins
Transcription factors

Predicted localization

Intracellular

Number of transcripts

1
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HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):Expressed in all
HPA (cell line):Expressed in all
HPA (normal tissue):Mixed

Protein evidence

Evidence at protein level

ANTIBODY IHC RELIABILITY

Reliability score

Pending cancer tissue analysis.

PROGNOSTIC SUMMARY

Prognostic marker in lung cancer (favourable), pancreatic cancer (favourable) and stomach cancer (favourable).
Lung cancer p<0.001
Pancreatic cancer p<0.001
Stomach cancer p<0.001
Show all

RNA EXPRESSION OVERVIEW

TCGA dataset
RNA cancer category: Expressed in all

PROTEIN EXPRESSION

Pending cancer tissue analysis


STAINING SUMMARY

 

GENE INFORMATION

Gene name

RFXAP

Synonyms

Description

Regulatory factor X-associated protein (HGNC Symbol)

Entrez gene summary

Major histocompatibility (MHC) class II molecules are transmembrane proteins that have a central role in development and control of the immune system. The protein encoded by this gene, along with regulatory factor X-associated ankyrin-containing protein and regulatory factor-5, forms a complex that binds to the X box motif of certain MHC class II gene promoters and activates their transcription. Once bound to the promoter, this complex associates with the non-DNA-binding factor MHC class II transactivator, which controls the cell type specificity and inducibility of MHC class II gene expression. Mutations in this gene have been linked to bare lymphocyte syndrome type II, complementation group D. Transcript variants utilizing different polyA signals have been found for this gene. [provided by RefSeq, Jul 2008]

Chromosome

13

Cytoband

q13.3

Chromosome location (bp)

36819224 - 36829104

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000133111 (version 83.38)

Entrez gene

5994

UniProt

O00287 (UniProt - Evidence at protein level)

neXtProt

NX_O00287

Antibodypedia

RFXAP antibodies

PROTEIN BROWSER

RFXAP-001

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

RFXAP-001
ENSP00000255476
ENST00000255476
O00287 [Direct mapping]
Regulatory factor X-associated protein
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   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
Transcription factors
   Yet undefined DNA-binding domains
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003677 [DNA binding]
GO:0003700 [transcription factor activity, sequence-specific DNA binding]
GO:0003713 [transcription coactivator activity]
GO:0005634 [nucleus]
GO:0045893 [positive regulation of transcription, DNA-templated]
Show all
272 aa
28.2 kDa
No 0

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