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HMGCS2

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:368.8TPM
GTEx:105.5RPKM
FANTOM5:81.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA027423

  

Antibody HPA027442

  

Antibody CAB032906

  

Endothelial cells

 Not detected   Not detected   Low  

Glandular cells

 High   High   High  

Peripheral nerve/ganglion

 Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

368.8
overview Male, age 54 Sample 1
TPM: 64.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 199.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 319.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 649
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 69.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 487.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 574.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 468.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 166.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 545.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 284.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 479.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 485.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

105.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 1.6
Samples: 149

Max RPKM: 48.6
Min RPKM: 0.0
Std RPKM: 5.8
Median RPKM: 0.1
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 48.6
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 31.3
GTEX-XBED-1726-SM-47JYO 60-69 years, male 26.6
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 26.5
GTEX-V955-1726-SM-4JBHF 60-69 years, male 14.1
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 11.2
GTEX-11ONC-1926-SM-5GU75 60-69 years, male 11.0
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 10.1
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 5.2
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 5.0
Show all
Colon - Transverse
RPKM: 184.5
Samples: 196

Max RPKM: 609.9
Min RPKM: 0.0
Std RPKM: 162.3
Median RPKM: 180.1
GTEX-Y3IK-1826-SM-4WWDS 50-59 years, female 609.9
GTEX-ZT9W-1826-SM-51MQX 50-59 years, male 585.5
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 579.2
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 571.1
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 540.8
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 505.6
GTEX-P4QT-1426-SM-3NMCX 50-59 years, female 497.4
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 490.3
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 481.6
GTEX-S7SF-1926-SM-4AT5B 20-29 years, female 481.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

81.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 81.6
FF:10014-101C5 62,83,84 years, mixed 81.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.