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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:230.8TPM
GTEx:140.7RPKM
FANTOM5:1139.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA029292

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

230.8
overview Male, age 54 Sample 1
TPM: 375.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 339.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 230.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 390.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 344.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 139.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 148.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 169
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 179.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 132.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 219.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 178.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 151.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

140.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 138.8
Samples: 149

Max RPKM: 264.6
Min RPKM: 67.7
Std RPKM: 37.6
Median RPKM: 133.8
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 264.6
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 237.0
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 222.5
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 220.5
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 214.9
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 214.4
GTEX-145LS-2926-SM-5O99G 60-69 years, female 210.8
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 210.7
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 210.3
GTEX-12696-1926-SM-5EGJT 60-69 years, male 206.5
Show all
Colon - Transverse
RPKM: 142.0
Samples: 196

Max RPKM: 357.1
Min RPKM: 60.1
Std RPKM: 44.0
Median RPKM: 136.3
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 357.1
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 315.4
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 315.0
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 312.6
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 289.3
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 268.0
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 250.1
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 234.0
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 233.2
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 231.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1139.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1139.9
FF:10014-101C5 62,83,84 years, mixed 1139.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.