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SCN7A

COLON - Expression summary

RNA expression
HPA:8.5TPM
GTEx:17.6RPKM
FANTOM5:40.0Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA004879

  

Glandular cells

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

8.5
overview Male, age 54 Sample 1
TPM: 12.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 8.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 8.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 9.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 6.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 14.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 2.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 12.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 12.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 8.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

17.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 27.3
Samples: 149

Max RPKM: 58.6
Min RPKM: 5.6
Std RPKM: 11.0
Median RPKM: 25.3
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 58.6
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 57.8
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 57.6
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 57.0
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 55.8
GTEX-12696-1926-SM-5EGJT 60-69 years, male 49.5
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 48.9
GTEX-V955-1726-SM-4JBHF 60-69 years, male 48.7
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 47.9
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 46.5
Show all
Colon - Transverse
RPKM: 10.3
Samples: 196

Max RPKM: 54.1
Min RPKM: 0.5
Std RPKM: 10.7
Median RPKM: 5.3
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 54.1
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 52.4
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 44.9
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 35.7
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 35.5
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 34.2
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 34.1
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 33.5
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 32.9
GTEX-S341-1426-SM-4AD6U 40-49 years, female 30.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

40.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 40.0
FF:10014-101C5 62,83,84 years, mixed 40.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.