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TPM1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:679.8TPM
GTEx:402.9RPKM
FANTOM5:1355.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA000261

  

Antibody HPA009066

  

Antibody HPA047089

  

Antibody HPA053624

  

Antibody CAB017698

  

Endothelial cells

 Not detected   High   Low   High   Medium  

Glandular cells

 Not detected   Medium   High   Low   Medium  

Peripheral nerve/ganglion

 Not detected   Low   Medium   Low   Not detected  
         
         
         

COLON - HPA RNA-seq

Average TPM

679.8
overview Male, age 54 Sample 1
TPM: 465.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 420.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 278.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 337
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 234.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3372.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 350.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 285.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1233
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 314.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 529.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 569.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 445.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

402.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 601.9
Samples: 149

Max RPKM: 1133.9
Min RPKM: 144.0
Std RPKM: 183.2
Median RPKM: 591.6
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 1133.9
GTEX-YF7O-1626-SM-5IFII 50-59 years, male 1071.1
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 1028.6
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 1000.0
GTEX-13CF2-1826-SM-5N9GK 60-69 years, male 960.7
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 959.9
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 946.7
GTEX-139UW-2326-SM-5KM1Y 60-69 years, male 917.0
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 913.8
GTEX-13QBU-2026-SM-5KLZB 40-49 years, female 905.8
Show all
Colon - Transverse
RPKM: 251.6
Samples: 196

Max RPKM: 970.2
Min RPKM: 37.8
Std RPKM: 210.3
Median RPKM: 167.7
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 970.2
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 866.0
GTEX-13VXT-2426-SM-5LU46 20-29 years, female 831.4
GTEX-11ZVC-2126-SM-5EGJ1 50-59 years, female 828.7
GTEX-11GSP-1626-SM-5986N 60-69 years, female 822.9
GTEX-ZYFC-2626-SM-5NQ6S 50-59 years, male 772.7
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 745.6
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 687.3
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 651.9
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 650.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1355.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1355.5
FF:10014-101C5 62,83,84 years, mixed 1355.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.