Tissue expression of CMTM3 - Summary - The Human Protein Atlas

GENERAL INFORMATION
Gene name	CMTM3
Gene description	CKLF-like MARVEL transmembrane domain containing 3
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	13
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

DATA RELIABILITY
Reliability score	Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

Bronchus

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

Skin

N/A

Skin

N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	CMTM3 (HGNC Symbol)
Synonyms	BNAS2, CKLFSF3, FLJ31762
Description	CKLF-like MARVEL transmembrane domain containing 3 (HGNC Symbol)
Entrez gene summary	This gene belongs to the chemokine-like factor gene superfamily, a novel family that is similar to the chemokine and the transmembrane 4 superfamilies of signaling molecules. This gene is one of several chemokine-like factor genes located in a cluster on chromosome 16. Alternatively spliced transcript variants containing different 5' UTRs, but encoding the same protein, have been identified. [provided by RefSeq, Jul 2008]
Chromosome	16
Cytoband	q22.1
Chromosome location (bp)	66603874 - 66613892
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000140931 (version 83.38)
Entrez gene	123920
UniProt	Q96MX0 (UniProt - Evidence at protein level)
neXtProt	NX_Q96MX0
Antibodypedia	CMTM3 antibodies

PROTEIN BROWSER

CMTM3-001	CMTM3-002	CMTM3-004	CMTM3-006	CMTM3-007	CMTM3-008	CMTM3-009	CMTM3-010	CMTM3-011	CMTM3-012	CMTM3-014	CMTM3-017	CMTM3-018

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CMTM3-001 ENSP00000400482 ENST00000424011	Q96MX0 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 3 A0A024R6Y8 [Target identity:100%; Query identity:100%] CKLF-like MARVEL transmembrane domain containing 3, isoform CRA_a Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 3TM proteins predicted by MDM Show all	GO:0005125 [cytokine activity] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0005737 [cytoplasm] GO:0006935 [chemotaxis] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0031965 [nuclear membrane] GO:0050861 [positive regulation of B cell receptor signaling pathway] Show all	182 aa 19.7 kDa	No	3
CMTM3-002 ENSP00000461758 ENST00000460097	B3KQJ8 [Direct mapping] CKLF-like MARVEL transmembrane domain containing 3, isoform CRA_b; CKLF-like MARVEL transmembrane domain-containing protein 3; cDNA FLJ90594 fis, clone PLACE1001123, highly similar to CKLF-like MARVEL transmembrane domain-containing protein 3 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	96 aa 10.6 kDa	No	2
CMTM3-004 ENSP00000354579 ENST00000361909	Q96MX0 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 3 A0A024R6Y8 [Target identity:100%; Query identity:100%] CKLF-like MARVEL transmembrane domain containing 3, isoform CRA_a Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 3TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005125 [cytokine activity] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0006935 [chemotaxis] GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	182 aa 19.7 kDa	No	3
CMTM3-006 ENSP00000455851 ENST00000567572	Q96MX0 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 3 A0A024R6Y8 [Target identity:100%; Query identity:100%] CKLF-like MARVEL transmembrane domain containing 3, isoform CRA_a Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 3TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005125 [cytokine activity] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0006935 [chemotaxis] GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	182 aa 19.7 kDa	No	3
CMTM3-007 ENSP00000457451 ENST00000563672	H3BU39 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 3 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	116 aa 12.7 kDa	No	2
CMTM3-008 ENSP00000455758 ENST00000562707	Q96MX0 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 3 A0A024R6Y8 [Target identity:100%; Query identity:100%] CKLF-like MARVEL transmembrane domain containing 3, isoform CRA_a Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 3TM proteins predicted by MDM Show all	GO:0005125 [cytokine activity] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0006935 [chemotaxis] GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	182 aa 19.7 kDa	No	3
CMTM3-009 ENSP00000457923 ENST00000566121	B3KQJ8 [Direct mapping] CKLF-like MARVEL transmembrane domain containing 3, isoform CRA_b; CKLF-like MARVEL transmembrane domain-containing protein 3; cDNA FLJ90594 fis, clone PLACE1001123, highly similar to CKLF-like MARVEL transmembrane domain-containing protein 3 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	96 aa 10.6 kDa	No	2
CMTM3-010 ENSP00000460330 ENST00000565003	I3L3C2 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 3 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	96 aa 10.7 kDa	No	2
CMTM3-011 ENSP00000457589 ENST00000564060	H3BUD5 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 3 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	150 aa 16.4 kDa	No	2
CMTM3-012 ENSP00000454628 ENST00000562357	H3BN06 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 3 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	122 aa 13.2 kDa	No	2
CMTM3-014 ENSP00000462554 ENST00000565666	J3KSM1 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 3 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	79 aa 8.4 kDa	No	1
CMTM3-017 ENSP00000456426 ENST00000565922	Q96MX0 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 3 Show all	Predicted intracellular proteins Show all	GO:0005125 [cytokine activity] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0006935 [chemotaxis] GO:0016021 [integral component of membrane] Show all	59 aa 6.2 kDa	No	0
CMTM3-018 ENSP00000461654 ENST00000568477	B3KQJ8 [Direct mapping] CKLF-like MARVEL transmembrane domain containing 3, isoform CRA_b; CKLF-like MARVEL transmembrane domain-containing protein 3; cDNA FLJ90594 fis, clone PLACE1001123, highly similar to CKLF-like MARVEL transmembrane domain-containing protein 3 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	96 aa 10.6 kDa	No	2