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Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

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Score

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Antibodies

Column

 
 
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CSNK1D
  • TISSUE

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    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

CSNK1D

Gene description

Casein kinase 1, delta

Protein class

Disease related genes
Enzymes
Plasma proteins
Potential drug targets
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

4
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Nuclear and cytoplasmic expression in all tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Approved based on 1 antibody.
CAB015410
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

CSNK1D (HGNC Symbol)

Synonyms

CKID, CKIdelta, HCKID

Description

Casein kinase 1, delta (HGNC Symbol)

Entrez gene summary

This gene is a member of the casein kinase I (CKI) gene family whose members have been implicated in the control of cytoplasmic and nuclear processes, including DNA replication and repair. The encoded protein may also be involved in the regulation of apoptosis, circadian rhythm, microtubule dynamics, chromosome segregation, and p53-mediated effects on growth. The encoded protein is highly similar to the mouse and rat CK1 delta homologs. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Feb 2014]

Chromosome

17

Cytoband

q25.3

Chromosome location (bp)

82239023 - 82273731

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000141551 (version 83.38)

Entrez gene

1453

UniProt

P48730 (UniProt - Evidence at protein level)

neXtProt

NX_P48730

Antibodypedia

CSNK1D antibodies

PROTEIN BROWSER

CSNK1D-001
CSNK1D-002
CSNK1D-006
CSNK1D-015

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

CSNK1D-001
ENSP00000324464
ENST00000314028
P48730 [Direct mapping]
Casein kinase I isoform delta
Show all
Enzymes
   ENZYME proteins
   Transferases
   Kinases
   CK1 Ser/Thr protein kinases
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Potential drug targets
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000086 [G2/M transition of mitotic cell cycle]
GO:0000139 [Golgi membrane]
GO:0000278 [mitotic cell cycle]
GO:0001934 [positive regulation of protein phosphorylation]
GO:0001948 [glycoprotein binding]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005813 [centrosome]
GO:0005819 [spindle]
GO:0005829 [cytosol]
GO:0005876 [spindle microtubule]
GO:0005886 [plasma membrane]
GO:0006281 [DNA repair]
GO:0006468 [protein phosphorylation]
GO:0006888 [ER to Golgi vesicle-mediated transport]
GO:0006897 [endocytosis]
GO:0006996 [organelle organization]
GO:0007020 [microtubule nucleation]
GO:0007030 [Golgi organization]
GO:0007165 [signal transduction]
GO:0008360 [regulation of cell shape]
GO:0016055 [Wnt signaling pathway]
GO:0018105 [peptidyl-serine phosphorylation]
GO:0018279 [protein N-linked glycosylation via asparagine]
GO:0032436 [positive regulation of proteasomal ubiquitin-dependent protein catabolic process]
GO:0032922 [circadian regulation of gene expression]
GO:0033116 [endoplasmic reticulum-Golgi intermediate compartment membrane]
GO:0034067 [protein localization to Golgi apparatus]
GO:0035058 [nonmotile primary cilium assembly]
GO:0042277 [peptide binding]
GO:0042752 [regulation of circadian rhythm]
GO:0043005 [neuron projection]
GO:0043687 [post-translational protein modification]
GO:0044267 [cellular protein metabolic process]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0050321 [tau-protein kinase activity]
GO:0051219 [phosphoprotein binding]
GO:0051225 [spindle assembly]
GO:0061024 [membrane organization]
GO:0061512 [protein localization to cilium]
GO:0071539 [protein localization to centrosome]
GO:0090263 [positive regulation of canonical Wnt signaling pathway]
GO:1990090 [cellular response to nerve growth factor stimulus]
Show all
415 aa
47.3 kDa
No 0
CSNK1D-002
ENSP00000376146
ENST00000392334
P48730 [Direct mapping]
Casein kinase I isoform delta
Show all
Enzymes
   ENZYME proteins
   Transferases
   Kinases
   CK1 Ser/Thr protein kinases
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Plasma proteins
Disease related genes
Potential drug targets
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000086 [G2/M transition of mitotic cell cycle]
GO:0000139 [Golgi membrane]
GO:0000278 [mitotic cell cycle]
GO:0001934 [positive regulation of protein phosphorylation]
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005813 [centrosome]
GO:0005819 [spindle]
GO:0005829 [cytosol]
GO:0005876 [spindle microtubule]
GO:0005886 [plasma membrane]
GO:0006281 [DNA repair]
GO:0006468 [protein phosphorylation]
GO:0006888 [ER to Golgi vesicle-mediated transport]
GO:0006897 [endocytosis]
GO:0006996 [organelle organization]
GO:0007020 [microtubule nucleation]
GO:0007030 [Golgi organization]
GO:0007165 [signal transduction]
GO:0008360 [regulation of cell shape]
GO:0016055 [Wnt signaling pathway]
GO:0018105 [peptidyl-serine phosphorylation]
GO:0018279 [protein N-linked glycosylation via asparagine]
GO:0032436 [positive regulation of proteasomal ubiquitin-dependent protein catabolic process]
GO:0032922 [circadian regulation of gene expression]
GO:0033116 [endoplasmic reticulum-Golgi intermediate compartment membrane]
GO:0034067 [protein localization to Golgi apparatus]
GO:0035058 [nonmotile primary cilium assembly]
GO:0042752 [regulation of circadian rhythm]
GO:0043687 [post-translational protein modification]
GO:0044267 [cellular protein metabolic process]
GO:0048208 [COPII vesicle coating]
GO:0048471 [perinuclear region of cytoplasm]
GO:0050321 [tau-protein kinase activity]
GO:0051225 [spindle assembly]
GO:0061024 [membrane organization]
GO:0061512 [protein localization to cilium]
GO:0071539 [protein localization to centrosome]
GO:0090263 [positive regulation of canonical Wnt signaling pathway]
Show all
409 aa
46.8 kDa
No 0
CSNK1D-006
ENSP00000381531
ENST00000398519
H7BYT1 [Direct mapping]
Casein kinase I isoform delta
Show all
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0005524 [ATP binding]
GO:0005737 [cytoplasm]
GO:0006468 [protein phosphorylation]
GO:0006897 [endocytosis]
GO:0008360 [regulation of cell shape]
GO:0016055 [Wnt signaling pathway]
GO:0018105 [peptidyl-serine phosphorylation]
Show all
427 aa
49.1 kDa
No 0
CSNK1D-015
ENSP00000463757
ENST00000580446
J3QQI9 [Direct mapping]
Casein kinase I isoform delta
Show all
   MEMSAT-SVM predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0004672 [protein kinase activity]
GO:0004674 [protein serine/threonine kinase activity]
GO:0005524 [ATP binding]
GO:0005737 [cytoplasm]
GO:0006468 [protein phosphorylation]
GO:0006897 [endocytosis]
GO:0008360 [regulation of cell shape]
GO:0016055 [Wnt signaling pathway]
GO:0018105 [peptidyl-serine phosphorylation]
Show all
187 aa
21.5 kDa
No 0

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