Expression of CCDC97 in cancer - Summary

GENERAL INFORMATION
Gene name	CCDC97
Gene description	Coiled-coil domain containing 97
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	3
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA category

Protein evidence

Evidence at protein level

Protein expression
normal tissue

Nuclear and nuclear membrane expression in most tissues, including testis fallopian tube and a few lymphoid tissues.

ANTIBODY IHC RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data. Pending external verification.
Reliability score	Supported based on 2 antibodies. HPA043320 , HPA043572
	SHOW MORE

PROGNOSTIC SUMMARY
Prognostic marker in liver cancer (unfavourable).
Liver cancer p<0.001 Show all

RNA EXPRESSION OVERVIEW
TCGA dataset RNA cancer category: Expressed in all

PROTEIN EXPRESSION

STAINING SUMMARY

HPA043320	HPA043572

GENE INFORMATION
Gene name	CCDC97 (HGNC Symbol)
Synonyms	FLJ40267, MGC20255
Description	Coiled-coil domain containing 97 (HGNC Symbol)
Entrez gene summary
Chromosome	19
Cytoband	q13.2
Chromosome location (bp)	41310189 - 41324883
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000142039 (version 83.38)
Entrez gene	90324
UniProt	Q96F63 (UniProt - Evidence at protein level)
neXtProt	NX_Q96F63
Antibodypedia	CCDC97 antibodies

PROTEIN BROWSER

CCDC97-001	CCDC97-002	CCDC97-003

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CCDC97-001 ENSP00000269967 ENST00000269967	Q96F63 [Direct mapping] Coiled-coil domain-containing protein 97 Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005686 [U2 snRNP] Show all	343 aa 38.9 kDa	No	0
CCDC97-002 ENSP00000470858 ENST00000596882	M0QZY6 [Direct mapping] Coiled-coil domain-containing protein 97 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005686 [U2 snRNP] Show all	16 aa 1.7 kDa	No	0
CCDC97-003 ENSP00000469348 ENST00000600918	M0QXS4 [Direct mapping] Coiled-coil domain-containing protein 97 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005686 [U2 snRNP] Show all	154 aa 17.5 kDa	No	0