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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:359.7TPM
GTEx:117.2RPKM
FANTOM5:417.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA001462

  

Antibody CAB000157

  

Endothelial cells

 Medium   Not detected  

Glandular cells

 Medium   Low  

Peripheral nerve/ganglion

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

359.7
overview Male, age 54 Sample 1
TPM: 589.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 378.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 370.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 371.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 236.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 283.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 342.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 351.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 304.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 330.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 505.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 378.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 231.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

117.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 101.9
Samples: 149

Max RPKM: 176.7
Min RPKM: 47.0
Std RPKM: 24.5
Median RPKM: 101.3
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 176.7
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 159.0
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 158.4
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 148.4
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 145.9
GTEX-145LS-2926-SM-5O99G 60-69 years, female 145.9
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 145.9
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 145.9
GTEX-11EI6-2626-SM-5PNVT 60-69 years, male 145.0
GTEX-13111-1926-SM-5GCOL 50-59 years, male 140.8
Show all
Colon - Transverse
RPKM: 128.8
Samples: 196

Max RPKM: 209.7
Min RPKM: 47.9
Std RPKM: 30.9
Median RPKM: 127.4
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 209.7
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 197.5
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 195.5
GTEX-OHPM-1426-SM-3TW8Y 50-59 years, male 195.2
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 195.1
GTEX-R55G-1226-SM-48FDC 40-49 years, female 192.9
GTEX-PWN1-1426-SM-48TDF 40-49 years, female 188.8
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 187.3
GTEX-ZVT2-1926-SM-5GU5T 50-59 years, female 187.2
GTEX-13FTW-1826-SM-5IJEN 40-49 years, male 186.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

417.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 417.2
FF:10014-101C5 62,83,84 years, mixed 417.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.