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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:45.6TPM
GTEx:31.0RPKM
FANTOM5:88.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
 

Antibody staining

Antibody HPA049840

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

45.6
overview Male, age 54 Sample 1
TPM: 49.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 34.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 40.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 33.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 16.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 46.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 54.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 49.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 63
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 61.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 56.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 50.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 35.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

31.0

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 37.3
Samples: 149

Max RPKM: 79.0
Min RPKM: 14.4
Std RPKM: 10.0
Median RPKM: 36.1
GTEX-12WSM-1426-SM-5GCPA 60-69 years, male 79.0
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 73.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 60.1
GTEX-11P7K-1826-SM-5HL5A 30-39 years, male 57.4
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 57.1
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 56.0
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 54.5
GTEX-ZPIC-2626-SM-57WE2 40-49 years, female 53.2
GTEX-XBED-1726-SM-47JYO 60-69 years, male 52.7
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 52.5
Show all
Colon - Transverse
RPKM: 26.3
Samples: 196

Max RPKM: 77.2
Min RPKM: 9.7
Std RPKM: 10.1
Median RPKM: 23.7
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 77.2
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 53.9
GTEX-13O61-1626-SM-5KM3T 60-69 years, male 51.0
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 50.5
GTEX-Y114-1526-SM-4TT79 50-59 years, female 50.5
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 50.4
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 48.9
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 48.6
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 48.1
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 47.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

88.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 88.9
FF:10014-101C5 62,83,84 years, mixed 88.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.