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Reliability

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Cancer

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KDM6A
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    TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

KDM6A

Gene description

Lysine (K)-specific demethylase 6A

Protein class

Cancer-related genes
Disease related genes
Predicted intracellular proteins
Predicted secreted proteins

Predicted localization

Intracellular,Secreted

Number of transcripts

10
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Nuclear expression in gastrointestinal tract, squamous epithelium and lymphoid tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly not consistent with RNA expression data. Caution, targets protein from more than one gene.

Reliability score

Supported based on 3 antibodies.
HPA000568 , HPA001165 , HPA002111
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

Placenta

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

KDM6A (HGNC Symbol)

Synonyms

UTX

Description

Lysine (K)-specific demethylase 6A (HGNC Symbol)

Entrez gene summary

This gene is located on the X chromosome and is the corresponding locus to a Y-linked gene which encodes a tetratricopeptide repeat (TPR) protein. The encoded protein of this gene contains a JmjC-domain and catalyzes the demethylation of tri/dimethylated histone H3. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Apr 2014]

Chromosome

X

Cytoband

p11.3

Chromosome location (bp)

44873177 - 45112602

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000147050 (version 83.38)

Entrez gene

7403

UniProt

O15550 (UniProt - Evidence at protein level)

neXtProt

NX_O15550

Antibodypedia

KDM6A antibodies

PROTEIN BROWSER

KDM6A-001
KDM6A-002
KDM6A-003
KDM6A-005
KDM6A-008
KDM6A-201
KDM6A-202
KDM6A-203
KDM6A-204
KDM6A-205

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

KDM6A-001
ENSP00000367203
ENST00000377967
O15550 [Direct mapping]
Lysine-specific demethylase 6A
Show all
   THUMBUP predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000978 [RNA polymerase II core promoter proximal region sequence-specific DNA binding]
GO:0001701 [in utero embryonic development]
GO:0001843 [neural tube closure]
GO:0003007 [heart morphogenesis]
GO:0003016 [respiratory system process]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006325 [chromatin organization]
GO:0007507 [heart development]
GO:0010468 [regulation of gene expression]
GO:0010628 [positive regulation of gene expression]
GO:0021915 [neural tube development]
GO:0031490 [chromatin DNA binding]
GO:0032525 [somite rostral/caudal axis specification]
GO:0035097 [histone methyltransferase complex]
GO:0035264 [multicellular organism growth]
GO:0042802 [identical protein binding]
GO:0046872 [metal ion binding]
GO:0048333 [mesodermal cell differentiation]
GO:0048568 [embryonic organ development]
GO:0048570 [notochord morphogenesis]
GO:0051213 [dioxygenase activity]
GO:0051568 [histone H3-K4 methylation]
GO:0055114 [oxidation-reduction process]
GO:0060070 [canonical Wnt signaling pathway]
GO:0071557 [histone H3-K27 demethylation]
GO:0071558 [histone demethylase activity (H3-K27 specific)]
GO:0072358 [cardiovascular system development]
Show all
1401 aa
154.2 kDa
Yes 0
KDM6A-002
ENSP00000405910
ENST00000414389
H0Y6I7 [Direct mapping]
Lysine-specific demethylase 6A
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0046872 [metal ion binding]
GO:0071557 [histone H3-K27 demethylation]
GO:0071558 [histone demethylase activity (H3-K27 specific)]
Show all
999 aa
109.1 kDa
No 0
KDM6A-003
ENSP00000398929
ENST00000433797
H0Y5J3 [Direct mapping]
Lysine-specific demethylase 6A
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0046872 [metal ion binding]
GO:0071557 [histone H3-K27 demethylation]
GO:0071558 [histone demethylase activity (H3-K27 specific)]
Show all
1044 aa
113.9 kDa
No 0
KDM6A-005
ENSP00000399980
ENST00000451692
H7C1F1 [Direct mapping]
Lysine-specific demethylase 6A
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
GO:0071557 [histone H3-K27 demethylation]
GO:0071558 [histone demethylase activity (H3-K27 specific)]
Show all
224 aa
23.6 kDa
No 0
KDM6A-008
ENSP00000408230
ENST00000431196
H0Y6V5 [Direct mapping]
Lysine-specific demethylase 6A
Show all
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0046872 [metal ion binding]
GO:0071557 [histone H3-K27 demethylation]
GO:0071558 [histone demethylase activity (H3-K27 specific)]
Show all
161 aa
18.4 kDa
No 0
KDM6A-201
ENSP00000372355
ENST00000382899
F8W8R6 [Direct mapping]
Lysine-specific demethylase 6A
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
GO:0071557 [histone H3-K27 demethylation]
GO:0071558 [histone demethylase activity (H3-K27 specific)]
Show all
1384 aa
152.6 kDa
No 0
KDM6A-202
ENSP00000437405
ENST00000536777
F5H6S1 [Direct mapping]
Lysine-specific demethylase 6A
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
GO:0071557 [histone H3-K27 demethylation]
GO:0071558 [histone demethylase activity (H3-K27 specific)]
Show all
1332 aa
147 kDa
No 0
KDM6A-203
ENSP00000443078
ENST00000543216
F5H5V6 [Direct mapping]
Lysine-specific demethylase 6A
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
GO:0071557 [histone H3-K27 demethylation]
GO:0071558 [histone demethylase activity (H3-K27 specific)]
Show all
1269 aa
139.1 kDa
No 0
KDM6A-204
ENSP00000483595
ENST00000611820
A0A087X0R0 [Direct mapping]
Lysine-specific demethylase 6A
Show all
   THUMBUP predicted membrane proteins
Predicted intracellular proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
GO:0071557 [histone H3-K27 demethylation]
GO:0071558 [histone demethylase activity (H3-K27 specific)]
Show all
1429 aa
157.5 kDa
No 0
KDM6A-205
ENSP00000478793
ENST00000621147
A0A087WUN6 [Direct mapping]
Lysine-specific demethylase 6A
Show all
   THUMBUP predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Large Deletions
   COSMIC Frameshift Mutations
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
GO:0071557 [histone H3-K27 demethylation]
GO:0071558 [histone demethylase activity (H3-K27 specific)]
Show all
224 aa
25 kDa
Yes 0

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