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MCPH1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:5.5TPM
GTEx:2.7RPKM
FANTOM5:42.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA008238

  

Antibody CAB012177

  

Endothelial cells

 Medium   Medium  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

5.5
overview Male, age 54 Sample 1
TPM: 4.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 5.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 4.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 5.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 4.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 5.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 6.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 5.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 5.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 4.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

2.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 2.9
Samples: 149

Max RPKM: 4.0
Min RPKM: 2.0
Std RPKM: 0.4
Median RPKM: 2.9
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 4.0
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 4.0
GTEX-13QBU-2026-SM-5KLZB 40-49 years, female 3.8
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 3.8
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 3.8
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 3.7
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 3.7
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 3.7
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 3.6
GTEX-12BJ1-2026-SM-5FQUH 60-69 years, male 3.6
Show all
Colon - Transverse
RPKM: 2.5
Samples: 196

Max RPKM: 4.2
Min RPKM: 0.8
Std RPKM: 0.5
Median RPKM: 2.4
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 4.2
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 3.9
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 3.8
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 3.7
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 3.6
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 3.6
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 3.6
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 3.5
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 3.5
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 3.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

42.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 42.4
FF:10014-101C5 62,83,84 years, mixed 42.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.