Tissue expression of LCN9 - Summary - The Human Protein Atlas

GENERAL INFORMATION
Gene name	LCN9
Gene description	Lipocalin 9
Protein class	Predicted secreted proteins
Predicted localization	Secreted
Number of transcripts	2
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Tissue enhanced (epididymis)
GTEx:	Not detected
FANTOM5:	Group enriched (epididymis, seminal vesicle)

Protein evidence

Evidence at transcript level

DATA RELIABILITY
Reliability score	Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

Bronchus

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

Skin

N/A

Skin

N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (epididymis)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Not detected
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Group enriched (epididymis, seminal vesicle)

GENE INFORMATION
Gene name	LCN9
Synonyms
Description	Lipocalin 9 (HGNC Symbol)
Entrez gene summary	Members of the lipocalin family, such as LCN9, have a common structure consisting of an 8-stranded antiparallel beta-barrel that forms a cup-shaped ligand-binding pocket or calyx. Lipocalins generally bind small hydrophobic ligands and transport them to specific cells (Suzuki et al., 2004 [PubMed 15363845]).[supplied by OMIM, Aug 2009]
Chromosome	9
Cytoband	q34.3
Chromosome location (bp)	135663322 - 135666422
Protein evidence	Evidence at transcript level (all genes)
Ensembl	ENSG00000148386 (version 83.38)
Entrez gene	392399
UniProt	Q8WX39 (UniProt - Evidence at transcript level)
neXtProt	NX_Q8WX39
Antibodypedia	LCN9 antibodies

PROTEIN BROWSER

LCN9-002	LCN9-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
LCN9-002 ENSP00000277526 ENST00000277526	Q8WX39 [Direct mapping] Epididymal-specific lipocalin-9 V9HWI8 [Target identity:100%; Query identity:100%] Epididymis luminal protein 129 Show all	Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Show all	GO:0005215 [transporter activity] GO:0005550 [pheromone binding] GO:0005576 [extracellular region] GO:0006810 [transport] Show all	176 aa 20.3 kDa	Yes	0
LCN9-201 ENSP00000482296 ENST00000619315	A0A087WZ21 [Direct mapping] Epididymal-specific lipocalin-9 Show all	Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Show all	GO:0005215 [transporter activity] GO:0005550 [pheromone binding] GO:0005576 [extracellular region] GO:0006810 [transport] Show all	176 aa 20.2 kDa	Yes	0