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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:819.6TPM
GTEx:365.7RPKM
FANTOM5:1349.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 
 

Antibody staining

Antibody HPA041344

  

Antibody HPA049132

  

Antibody CAB000362

  

Antibody CAB005419

  

Endothelial cells

 Medium   Medium   Not detected   Medium  

Glandular cells

 Medium   Medium   Low   Low  

Peripheral nerve/ganglion

 Medium   Medium   Medium  
          
       
       
       

COLON - HPA RNA-seq

Average TPM

819.6
overview Male, age 54 Sample 1
TPM: 719.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 754.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 740
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 975.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 905.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 940.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 952.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 687.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 806.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 771.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 851.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 803.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 747.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

365.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 400.3
Samples: 149

Max RPKM: 1689.1
Min RPKM: 183.0
Std RPKM: 190.9
Median RPKM: 354.2
GTEX-12ZZW-2426-SM-5DUWE 50-59 years, male 1689.1
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 1194.6
GTEX-11PRG-2026-SM-5GU5F 50-59 years, male 1054.4
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 934.2
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 789.2
GTEX-ZAB4-2426-SM-5HL8A 40-49 years, male 777.5
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 769.4
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 750.6
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 723.2
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 695.7
Show all
Colon - Transverse
RPKM: 339.4
Samples: 196

Max RPKM: 1822.4
Min RPKM: 151.6
Std RPKM: 195.6
Median RPKM: 300.1
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 1822.4
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 1753.2
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 1369.4
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 774.4
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 740.0
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 684.5
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 659.5
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 574.4
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 573.9
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 555.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

1349.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 1349.1
FF:10014-101C5 62,83,84 years, mixed 1349.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.