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CDYL

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.6TPM
GTEx:6.7RPKM
FANTOM5:25.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Not available
 

Antibody staining

Antibody HPA035578

  

Antibody CAB012249

  

Endothelial cells

 Medium   Medium  

Glandular cells

 High   High  

Peripheral nerve/ganglion

 Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

13.6
overview Male, age 54 Sample 1
TPM: 19.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 12.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 9.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 12.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 12
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 14.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 14.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 9.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

6.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 7.1
Samples: 149

Max RPKM: 10.8
Min RPKM: 3.7
Std RPKM: 1.3
Median RPKM: 7.1
GTEX-ZZ64-0826-SM-5E449 20-29 years, male 10.8
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 10.7
GTEX-ZG7Y-1826-SM-4WWD3 50-59 years, male 10.1
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 10.0
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 9.8
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 9.4
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 9.4
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 9.3
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 9.1
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 9.1
Show all
Colon - Transverse
RPKM: 6.4
Samples: 196

Max RPKM: 10.2
Min RPKM: 3.4
Std RPKM: 1.1
Median RPKM: 6.1
GTEX-S341-1426-SM-4AD6U 40-49 years, female 10.2
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 10.1
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 9.7
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 9.2
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 9.1
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 9.0
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 9.0
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 8.9
GTEX-ZYFG-1926-SM-5GID5 60-69 years, female 8.9
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 8.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

25.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 25.4
FF:10014-101C5 62,83,84 years, mixed 25.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.