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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:26.8TPM
GTEx:13.2RPKM
FANTOM5:172.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA066710

  

Endothelial cells

 Low  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Medium  
 
 
 

COLON - HPA RNA-seq

Average TPM

26.8
overview Male, age 54 Sample 1
TPM: 38.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 30.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 22.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 29.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 17.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 23.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 26.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 24.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 21.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 24.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 32.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 29.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 27.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.2

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 11.2
Samples: 149

Max RPKM: 24.8
Min RPKM: 4.7
Std RPKM: 4.0
Median RPKM: 10.4
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 24.8
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 22.6
GTEX-14A5H-1626-SM-5SIAN 60-69 years, male 21.5
GTEX-ZZ64-0826-SM-5E449 20-29 years, male 20.9
GTEX-WI4N-2226-SM-4OOS9 40-49 years, female 20.8
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 20.7
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 20.3
GTEX-12WSJ-1426-SM-5GCON 40-49 years, female 20.2
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 20.1
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 19.0
Show all
Colon - Transverse
RPKM: 14.7
Samples: 196

Max RPKM: 24.6
Min RPKM: 7.1
Std RPKM: 3.3
Median RPKM: 14.9
GTEX-12WSJ-1526-SM-5GCNI 40-49 years, female 24.6
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 24.1
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 23.6
GTEX-14C38-2626-SM-5RQI4 50-59 years, male 23.6
GTEX-12C56-0626-SM-5EGGC 20-29 years, male 22.9
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 21.3
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 20.6
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 20.6
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 20.5
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 20.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

172.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 172.4
FF:10014-101C5 62,83,84 years, mixed 172.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.