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COLON - Expression summary

RNA expression
HPA:2.1TPM
GTEx:4.8RPKM
FANTOM5:5.1Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA051411

  

Endothelial cells

 Low  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

2.1
overview Male, age 54 Sample 1
TPM: 2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 1.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 3.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 4.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 3.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 6.8
Samples: 149

Max RPKM: 17.3
Min RPKM: 1.5
Std RPKM: 2.8
Median RPKM: 5.9
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 17.3
GTEX-ZA64-1426-SM-5CVMC 20-29 years, male 14.0
GTEX-11EM3-1626-SM-5N9CO 20-29 years, female 13.6
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 13.0
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 12.9
GTEX-11DXZ-1626-SM-5GIDI 50-59 years, male 12.7
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 12.5
GTEX-14BMU-1326-SM-5RQIH 20-29 years, female 12.4
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 12.2
GTEX-1122O-1426-SM-5H11R 60-69 years, female 12.1
Show all
Colon - Transverse
RPKM: 3.4
Samples: 196

Max RPKM: 16.9
Min RPKM: 0.3
Std RPKM: 3.1
Median RPKM: 2.5
GTEX-Y114-1526-SM-4TT79 50-59 years, female 16.9
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 16.7
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 16.2
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 12.0
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 10.5
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 10.3
GTEX-13FH7-1526-SM-5J2N6 50-59 years, female 10.2
GTEX-14ICL-1226-SM-5S2RD 30-39 years, male 9.8
GTEX-11EQ9-1426-SM-5987G 30-39 years, male 9.6
GTEX-S3XE-1126-SM-4AD4N 50-59 years, male 9.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

5.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 5.1
FF:10014-101C5 62,83,84 years, mixed 5.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.