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RRAGA

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:46.8TPM
GTEx:47.3RPKM
FANTOM5:79.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
 

Antibody staining

Antibody HPA003734

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  
 

COLON - HPA RNA-seq

Average TPM

46.8
overview Male, age 54 Sample 1
TPM: 46.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 38
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 31
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 46.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 33.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 74.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 54.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 44.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 55.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 41.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 49
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 54.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 38.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

47.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 52.2
Samples: 149

Max RPKM: 91.1
Min RPKM: 25.6
Std RPKM: 11.8
Median RPKM: 53.9
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 91.1
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 72.9
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 71.4
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 70.8
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 70.3
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 69.9
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 69.0
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 68.6
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 67.9
GTEX-111CU-1226-SM-5EGIN 50-59 years, male 67.2
Show all
Colon - Transverse
RPKM: 43.5
Samples: 196

Max RPKM: 79.4
Min RPKM: 18.2
Std RPKM: 10.4
Median RPKM: 41.8
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 79.4
GTEX-OXRL-1426-SM-3NM9E 50-59 years, male 72.1
GTEX-S341-1426-SM-4AD6U 40-49 years, female 68.2
GTEX-117YX-0826-SM-5H11J 50-59 years, male 67.9
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 67.2
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 66.6
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 63.2
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 62.7
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 62.7
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 62.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

79.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 79.9
FF:10014-101C5 62,83,84 years, mixed 79.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.