Tissue expression of RAET1L - Summary - The Human Protein Atlas

GENERAL INFORMATION
Gene name	RAET1L
Gene description	Retinoic acid early transcript 1L
Protein class	Predicted membrane proteins
Predicted localization	Membrane
Number of transcripts	2
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Tissue enriched (esophagus)
GTEx:	Group enriched (esophagus, vagina)
FANTOM5:	Group enriched (cervix, uterine, esophagus, tonsil)

Protein evidence

Evidence at transcript level

DATA RELIABILITY
Reliability score	Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

Bronchus

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

Skin

N/A

Skin

N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Tissue enriched (esophagus)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Group enriched (esophagus, vagina)
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Group enriched (cervix, uterine, esophagus, tonsil)

GENE INFORMATION
Gene name	RAET1L
Synonyms
Description	Retinoic acid early transcript 1L (HGNC Symbol)
Entrez gene summary	RAET1L belongs to the RAET1 family of major histocompatibility complex (MHC) class I-related genes, which are located within a 180-kb cluster on chromosome 6q24.2-q25.3. The REAT1 genes encode glycoproteins that contain extracellular alpha-1 and alpha-2 domains, but they lack the membrane proximal Ig-like alpha-3 domain. Most RAET1 glycoproteins are anchored to the membrane via glycosylphosphatidylinositol (GPI) linkage (Radosavljevic et al., 2002 [PubMed 11827464]).[supplied by OMIM, Mar 2008]
Chromosome	6
Cytoband	q25.1
Chromosome location (bp)	150018334 - 150025532
Protein evidence	Evidence at transcript level (all genes)
Ensembl	ENSG00000155918 (version 83.38)
Entrez gene	154064
UniProt	Q5VY80 (UniProt - Evidence at transcript level)
neXtProt	NX_Q5VY80
Antibodypedia	RAET1L antibodies

PROTEIN BROWSER

RAET1L-001	RAET1L-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
RAET1L-001 ENSP00000356310 ENST00000367341	Q5VY80 [Direct mapping] Retinoic acid early transcript 1L protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005886 [plasma membrane] GO:0006955 [immune response] GO:0031225 [anchored component of membrane] GO:0042267 [natural killer cell mediated cytotoxicity] GO:0046703 [natural killer cell lectin-like receptor binding] Show all	246 aa 27.5 kDa	Yes	1
RAET1L-201 ENSP00000286380 ENST00000286380	Q5VY80 [Direct mapping] Retinoic acid early transcript 1L protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005886 [plasma membrane] GO:0006955 [immune response] GO:0031225 [anchored component of membrane] GO:0042267 [natural killer cell mediated cytotoxicity] GO:0046703 [natural killer cell lectin-like receptor binding] Show all	246 aa 27.5 kDa	Yes	1