Fields »
ABOUT
HELP
BLOG
AIFM1

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:38.2TPM
GTEx:14.1RPKM
FANTOM5:38.7Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA030611

  

Antibody CAB003764

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Low   Low  

Peripheral nerve/ganglion

 Not detected   Not detected  
   
   

COLON - HPA RNA-seq

Average TPM

38.2
overview Male, age 54 Sample 1
TPM: 32.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 26.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 40.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 48.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 19.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 40.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 51.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 40.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 35.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 50.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 44.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 38.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 29.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

14.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.8
Samples: 149

Max RPKM: 16.5
Min RPKM: 3.9
Std RPKM: 2.2
Median RPKM: 9.7
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 16.5
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 16.0
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 14.5
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 14.2
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 14.0
GTEX-ZP4G-1526-SM-57WE5 20-29 years, female 13.7
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 13.6
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 13.5
GTEX-ZVT2-1726-SM-51MRO 50-59 years, female 13.4
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 13.2
Show all
Colon - Transverse
RPKM: 17.4
Samples: 196

Max RPKM: 36.7
Min RPKM: 5.3
Std RPKM: 6.9
Median RPKM: 17.2
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 36.7
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 33.6
GTEX-YF7O-1726-SM-5IFJ9 50-59 years, male 31.0
GTEX-ZF2S-1926-SM-4WWAN 50-59 years, female 31.0
GTEX-U4B1-1126-SM-4DXV3 40-49 years, male 30.7
GTEX-Q2AI-0926-SM-48U1F 40-49 years, male 30.4
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 30.4
GTEX-P4QT-1426-SM-3NMCX 50-59 years, female 30.0
GTEX-145MN-1726-SM-5SIA6 30-39 years, male 29.9
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 29.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

38.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 38.7
FF:10014-101C5 62,83,84 years, mixed 38.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.