Expression of HIAT1 in cancer - Summary - The Human Protein Atlas

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HIAT1

TISSUE

CELL

PATHOLOGY

GENERAL INFORMATION
Gene name	HIAT1
Gene description	Hippocampus abundant transcript 1
Protein class	Predicted membrane proteins
Predicted localization	Membrane
Number of transcripts	2
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA category

TCGA (cancer tissue):	Expressed in all
HPA (cell line):	Expressed in all
HPA (normal tissue):	Expressed in all

Protein evidence

Evidence at transcript level

ANTIBODY IHC RELIABILITY
Reliability score	Pending cancer tissue analysis.

PROGNOSTIC SUMMARY
Prognostic marker in liver cancer (unfavourable).
Liver cancer p<0.001 Show all

RNA EXPRESSION OVERVIEW
TCGA dataset RNA cancer category: Expressed in all

PROTEIN EXPRESSION
Pending cancer tissue analysis
STAINING SUMMARY

GENE INFORMATION
Gene name	HIAT1 (HGNC Symbol)
Synonyms	DKFZP564L0864
Description	Hippocampus abundant transcript 1 (HGNC Symbol)
Entrez gene summary
Chromosome	1
Cytoband	p21.2
Chromosome location (bp)	100038097 - 100083377
Protein evidence	Evidence at transcript level (all genes)
Ensembl	ENSG00000156875 (version 83.38)
Entrez gene	64645
UniProt	Q96MC6 (UniProt - Evidence at transcript level)
neXtProt	NX_Q96MC6
Antibodypedia	HIAT1 antibodies

PROTEIN BROWSER

HIAT1-001	HIAT1-002

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
HIAT1-001 ENSP00000359171 ENST00000370152	Q96MC6 [Direct mapping] Hippocampus abundant transcript 1 protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based >9TM proteins predicted by MDM Show all	GO:0005215 [transporter activity] GO:0016021 [integral component of membrane] GO:0022891 [substrate-specific transmembrane transporter activity] GO:0055085 [transmembrane transport] Show all	490 aa 53 kDa	No	>9
HIAT1-002 ENSP00000411185 ENST00000421661	H7C3C9 [Direct mapping] Hippocampus abundant transcript 1 protein Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 3TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] GO:0055085 [transmembrane transport] Show all	120 aa 13.5 kDa	No	3

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.