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PSMB4

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:151.3TPM
GTEx:133.9RPKM
FANTOM5:64.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Low
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA006700

  

Endothelial cells

 Medium  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

151.3
overview Male, age 54 Sample 1
TPM: 141.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 127.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 112
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 116.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 112.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 209.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 208.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 143.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 172.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 170.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 170.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 166.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 115.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

133.9

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 143.2
Samples: 149

Max RPKM: 216.3
Min RPKM: 89.2
Std RPKM: 19.9
Median RPKM: 140.2
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 216.3
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 207.3
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 207.2
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 194.3
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 186.5
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 184.9
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 183.9
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 181.4
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 180.3
GTEX-XUJ4-2126-SM-4BOOX 60-69 years, female 180.1
Show all
Colon - Transverse
RPKM: 126.9
Samples: 196

Max RPKM: 190.4
Min RPKM: 81.3
Std RPKM: 22.2
Median RPKM: 125.9
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 190.4
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 188.8
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 181.8
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 181.4
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 178.6
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 178.3
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 176.8
GTEX-SNOS-1226-SM-4DM5H 40-49 years, male 174.9
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 171.7
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 166.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

64.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 64.9
FF:10014-101C5 62,83,84 years, mixed 64.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.