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EFCAB14

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:39.8TPM
GTEx:20.1RPKM
FANTOM5:73.3Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA011224

  

Antibody HPA011938

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium   Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

39.8
overview Male, age 54 Sample 1
TPM: 41.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 41.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 28.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 42.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 26.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 32.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 46.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 45.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 40.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 40.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 56.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 44.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 30.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

20.1

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 19.9
Samples: 149

Max RPKM: 27.4
Min RPKM: 13.3
Std RPKM: 3.0
Median RPKM: 19.8
GTEX-13111-1926-SM-5GCOL 50-59 years, male 27.4
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 27.2
GTEX-145LS-2926-SM-5O99G 60-69 years, female 26.5
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 26.3
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 25.9
GTEX-111YS-1826-SM-5GIEP 60-69 years, male 25.7
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 25.0
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 24.9
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 24.8
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 24.8
Show all
Colon - Transverse
RPKM: 20.3
Samples: 196

Max RPKM: 28.3
Min RPKM: 10.0
Std RPKM: 3.2
Median RPKM: 20.2
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 28.3
GTEX-P4PP-1426-SM-3NM9L 30-39 years, female 27.5
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 27.5
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 27.4
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 27.4
GTEX-11VI4-1526-SM-5EQKC 40-49 years, female 27.1
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 26.9
GTEX-S3XE-1126-SM-4AD4N 50-59 years, male 26.3
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 25.9
GTEX-ZYWO-1626-SM-5E44H 40-49 years, female 25.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

73.3

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 73.3
FF:10014-101C5 62,83,84 years, mixed 73.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.