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COLON - Expression summary

RNA expression
HPA:0.9TPM
GTEx:1.6RPKM
FANTOM5:6.9Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

0.9
overview Male, age 54 Sample 1
TPM: 1.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 0.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 0.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 0.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 0.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 0.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 0.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 1.4
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

1.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.3
Samples: 149

Max RPKM: 2.5
Min RPKM: 0.0
Std RPKM: 0.3
Median RPKM: 0.2
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 2.5
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 2.1
GTEX-V955-1726-SM-4JBHF 60-69 years, male 1.1
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 1.0
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 0.9
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 0.9
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 0.8
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 0.8
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 0.8
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 0.8
Show all
Colon - Transverse
RPKM: 2.6
Samples: 196

Max RPKM: 11.6
Min RPKM: 0.0
Std RPKM: 2.3
Median RPKM: 2.1
GTEX-R55G-1226-SM-48FDC 40-49 years, female 11.6
GTEX-RM2N-0926-SM-48FD1 50-59 years, male 10.7
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 9.0
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 8.8
GTEX-145LT-0926-SM-5LU9C 40-49 years, male 8.0
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 7.8
GTEX-11DXZ-1726-SM-5H12M 50-59 years, male 7.6
GTEX-ZV7C-1526-SM-5NQ72 50-59 years, male 7.5
GTEX-13FTW-1826-SM-5IJEN 40-49 years, male 7.0
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 7.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

6.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 6.9
FF:10014-101C5 62,83,84 years, mixed 6.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.