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BBS5

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:1.9TPM
GTEx:3.8RPKM
FANTOM5:6.2Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA046125

  

Endothelial cells

 Low  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

1.9
overview Male, age 54 Sample 1
TPM: 3.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 1.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 3.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 1.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 1.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 1.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 1.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 2.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

3.8

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.1
Samples: 149

Max RPKM: 11.2
Min RPKM: 3.2
Std RPKM: 1.2
Median RPKM: 4.9
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 11.2
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 10.5
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 9.0
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 8.8
GTEX-13OW6-2226-SM-5N9FL 50-59 years, male 8.6
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 7.4
GTEX-ZVT3-2826-SM-5GU6A 60-69 years, female 7.2
GTEX-X4EO-2726-SM-4E3HS 60-69 years, female 7.1
GTEX-Y9LG-1326-SM-4VBQB 30-39 years, male 7.0
GTEX-11TUW-2326-SM-5EQMO 60-69 years, male 6.8
Show all
Colon - Transverse
RPKM: 2.9
Samples: 196

Max RPKM: 10.0
Min RPKM: 0.6
Std RPKM: 1.6
Median RPKM: 2.5
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 10.0
GTEX-11TUW-2026-SM-5EQL8 60-69 years, male 8.7
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 7.9
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 6.8
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 6.3
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 6.3
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 5.9
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 5.8
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 5.7
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 5.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

6.2

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 6.2
FF:10014-101C5 62,83,84 years, mixed 6.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.