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SCNM1

GENERAL INFORMATION

Gene name

 SCNM1

Gene description

 Sodium channel modifier 1

Protein class

 Predicted intracellular proteins

Predicted localization

 Intracellular

Number of transcripts

 3
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

 Evidence at protein level

Protein expression

 General cytoplasmic expression.

DATA RELIABILITY

Data reliability
description

 Pending external verification. Caution, Splice and/or transcript discrepancy exists.

Reliability score

 Uncertain based on 1 antibody.
HPA052439
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RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

Endometrium

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

 SCNM1 (HGNC Symbol)

Synonyms

 MGC3180

Description

 Sodium channel modifier 1 (HGNC Symbol)

Entrez gene summary

 SCNM1 is a zinc finger protein and putative splicing factor. In mice, Scnm1 modifies phenotypic expression of Scn8a (MIM 600702) mutations (Buchner et al., 2003 [PubMed 12920299]).[supplied by OMIM, Oct 2009]

Chromosome

 1

Cytoband

 q21.3

Chromosome location (bp)

 151156664 - 151170297

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000163156 (version 83.38)

Entrez gene

 79005

UniProt

 Q9BWG6 (UniProt - Evidence at protein level)

neXtProt

 NX_Q9BWG6

Antibodypedia

 SCNM1 antibodies

PROTEIN BROWSER
SCNM1-001
SCNM1-004
SCNM1-007

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
SCNM1-001
ENSP00000357901
ENST00000368905
Q9BWG6 [Direct mapping]
Sodium channel modifier 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0016607 [nuclear speck]
GO:0019899 [enzyme binding]
GO:0046872 [metal ion binding]
Show all
 230 aa
25.9 kDa 		No 0
SCNM1-004
ENSP00000357898
ENST00000368902
Q9BWG6 [Direct mapping]
Sodium channel modifier 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0016607 [nuclear speck]
GO:0019899 [enzyme binding]
GO:0046872 [metal ion binding]
Show all
 195 aa
21.9 kDa 		No 0
SCNM1-007
ENSP00000473282
ENST00000602841
Q9BWG6 [Direct mapping]
Sodium channel modifier 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0016607 [nuclear speck]
GO:0019899 [enzyme binding]
GO:0046872 [metal ion binding]
Show all
 195 aa
21.9 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.