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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.0TPM
GTEx:8.6RPKM
FANTOM5:50.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA042163

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 
 

COLON - HPA RNA-seq

Average TPM

13.0
overview Male, age 54 Sample 1
TPM: 11
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 12.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 8.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 22
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 10.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 11.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 12.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 14.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 10.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 16
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 15.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

8.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 9.2
Samples: 149

Max RPKM: 18.1
Min RPKM: 5.2
Std RPKM: 2.1
Median RPKM: 8.9
GTEX-145LS-2926-SM-5O99G 60-69 years, female 18.1
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 16.7
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 16.4
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 14.3
GTEX-13X6I-2726-SM-5Q5ET 60-69 years, male 14.2
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 14.2
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 14.2
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 13.7
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 13.4
GTEX-ZTTD-2626-SM-57WEX 50-59 years, male 13.1
Show all
Colon - Transverse
RPKM: 8.2
Samples: 196

Max RPKM: 20.8
Min RPKM: 4.6
Std RPKM: 2.8
Median RPKM: 7.4
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 20.8
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 19.8
GTEX-13OVG-1426-SM-5K7VP 60-69 years, male 19.1
GTEX-12KS4-2426-SM-5LU8P 30-39 years, male 17.4
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 17.1
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 16.1
GTEX-117YW-1826-SM-5PNY5 50-59 years, male 15.9
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 14.0
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 13.6
GTEX-S4Q7-0826-SM-4AD5E 20-29 years, male 13.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

50.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 50.9
FF:10014-101C5 62,83,84 years, mixed 50.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.