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CAMLG

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:22.6TPM
GTEx:21.7RPKM
FANTOM5:87.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA052636

  

Antibody HPA056472

  

Endothelial cells

 Low   Not detected  

Glandular cells

 Medium   Low  

Peripheral nerve/ganglion

 High   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

22.6
overview Male, age 54 Sample 1
TPM: 26.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 21
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 17.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 29.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 18
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 27
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 20.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 18.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 27.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 18.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 21.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 24.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 22.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.7

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 26.4
Samples: 149

Max RPKM: 57.3
Min RPKM: 14.2
Std RPKM: 7.0
Median RPKM: 25.2
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 57.3
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 48.1
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 41.5
GTEX-1477Z-2126-SM-5Q5CM 60-69 years, male 40.3
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 39.7
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 38.6
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 38.1
GTEX-ZAJG-2626-SM-5S2NU 50-59 years, female 38.0
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 37.0
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 36.9
Show all
Colon - Transverse
RPKM: 18.1
Samples: 196

Max RPKM: 54.6
Min RPKM: 7.6
Std RPKM: 8.8
Median RPKM: 14.8
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 54.6
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 50.7
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 38.6
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 38.5
GTEX-ZYVF-2826-SM-5GIDK 50-59 years, female 38.5
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 36.4
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 36.3
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 36.1
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 35.8
GTEX-Y114-1526-SM-4TT79 50-59 years, female 35.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

87.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 87.8
FF:10014-101C5 62,83,84 years, mixed 87.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.