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COLON - Expression summary

RNA expression
HPA:10.5TPM
GTEx:5.4RPKM
FANTOM5:25.7Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

10.5
overview Male, age 54 Sample 1
TPM: 11.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 14
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 14
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 12.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 11.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 8.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 11.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 12.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 6.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.4

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 5.9
Samples: 149

Max RPKM: 9.8
Min RPKM: 3.2
Std RPKM: 1.1
Median RPKM: 6.0
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 9.8
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 8.7
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 8.4
GTEX-13OVI-2126-SM-5KM3U 60-69 years, female 8.0
GTEX-13111-1926-SM-5GCOL 50-59 years, male 7.9
GTEX-13D11-0626-SM-5LZYY 50-59 years, female 7.9
GTEX-132AR-2826-SM-5IJFV 50-59 years, female 7.7
GTEX-139T6-1426-SM-5P9J7 50-59 years, male 7.7
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 7.7
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 7.6
Show all
Colon - Transverse
RPKM: 5.1
Samples: 196

Max RPKM: 8.1
Min RPKM: 1.7
Std RPKM: 1.1
Median RPKM: 4.9
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 8.1
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 7.7
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 7.6
GTEX-TKQ1-0626-SM-4DXTS 30-39 years, male 7.6
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 7.6
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 7.5
GTEX-S3XE-1126-SM-4AD4N 50-59 years, male 7.4
GTEX-Y114-1526-SM-4TT79 50-59 years, female 7.4
GTEX-QLQ7-1126-SM-4R1KN 60-69 years, male 7.3
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 7.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

25.7

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 25.7
FF:10014-101C5 62,83,84 years, mixed 25.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.