Cell atlas - CMTM5 - The Human Protein Atlas

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CMTM5

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TISSUE

CELL

PATHOLOGY

CELL ATLAS RNA EXPRESSION

GENE/PROTEIN

Dictionary

Human cell

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GENERAL INFORMATION
Gene name	CMTM5
Gene description	CKLF-like MARVEL transmembrane domain containing 5
Protein class	Predicted membrane proteins
Predicted localization	Membrane
Number of transcripts	6
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION
Summary
RNA cell category	Cell line enriched (HEL)
Protein evidence	Evidence at protein level
Main location	Not available

DATA RELIABILITY
Reliability score	Pending cell analysis.

ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Cell line enriched (HEL) Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

GENE INFORMATION
Gene name	CMTM5 (HGNC Symbol)
Synonyms	CKLFSF5, FLJ37521
Description	CKLF-like MARVEL transmembrane domain containing 5 (HGNC Symbol)
Entrez gene summary	This gene encodes a member of the chemokine-like factor superfamily. This family of genes encodes multi-pass membrane proteins that are similar to both the chemokine and the transmembrane 4 superfamilies of signaling molecules. The encoded protein may exhibit tumor suppressor activity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]
Chromosome	14
Cytoband	q11.2
Chromosome location (bp)	23376808 - 23379772
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000166091 (version 83.38)
Entrez gene	116173
UniProt	Q96DZ9 (UniProt - Evidence at protein level)
neXtProt	NX_Q96DZ9
Antibodypedia	CMTM5 antibodies

PROTEIN BROWSER

CMTM5-001	CMTM5-003	CMTM5-004	CMTM5-005	CMTM5-007	CMTM5-009

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CMTM5-001 ENSP00000352270 ENST00000359320	Q96DZ9 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 5 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 3TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005125 [cytokine activity] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0006935 [chemotaxis] GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	156 aa 17.4 kDa	No	3
CMTM5-003 ENSP00000344819 ENST00000339180	Q96DZ9 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 5 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 4TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005125 [cytokine activity] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0006935 [chemotaxis] GO:0016020 [membrane] GO:0016021 [integral component of membrane] GO:0045662 [negative regulation of myoblast differentiation] Show all	223 aa 24.7 kDa	No	4
CMTM5-004 ENSP00000344160 ENST00000342473	Q96DZ9 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 5 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005125 [cytokine activity] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0006935 [chemotaxis] GO:0016021 [integral component of membrane] Show all	74 aa 8.3 kDa	No	1
CMTM5-005 ENSP00000380404 ENST00000397227	Q96DZ9 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 5 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005125 [cytokine activity] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0006935 [chemotaxis] GO:0016021 [integral component of membrane] Show all	105 aa 11.5 kDa	No	2
CMTM5-007 ENSP00000451514 ENST00000555731	C9JAI6 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 5 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0016021 [integral component of membrane] Show all	118 aa 13.2 kDa	No	2
CMTM5-009 ENSP00000372259 ENST00000382809	Q96DZ9 [Direct mapping] CKLF-like MARVEL transmembrane domain-containing protein 5 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005125 [cytokine activity] GO:0005515 [protein binding] GO:0005615 [extracellular space] GO:0006935 [chemotaxis] GO:0016020 [membrane] GO:0016021 [integral component of membrane] Show all	125 aa 14.2 kDa	No	2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.