Fields »
ABOUT
HELP
BLOG
RNF187

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:13.6TPM
GTEx:21.3RPKM
FANTOM5:66.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA030098

  

Endothelial cells

 Medium  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 High  
 
 
 

COLON - HPA RNA-seq

Average TPM

13.6
overview Male, age 54 Sample 1
TPM: 22.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 15.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 21.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 14.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 10.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 6.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 8.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 12.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 11.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 11.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 16.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 9.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.3

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 22.4
Samples: 149

Max RPKM: 34.2
Min RPKM: 14.2
Std RPKM: 3.9
Median RPKM: 22.2
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 34.2
GTEX-12WSG-2426-SM-5EQLZ 50-59 years, female 32.3
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 32.0
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 31.7
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 31.3
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 29.6
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 29.2
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 28.8
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 28.8
GTEX-WQUQ-2626-SM-4MVNP 60-69 years, male 28.6
Show all
Colon - Transverse
RPKM: 20.4
Samples: 196

Max RPKM: 31.9
Min RPKM: 5.1
Std RPKM: 3.8
Median RPKM: 20.3
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 31.9
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 31.8
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 30.1
GTEX-147JS-2526-SM-5S2Q8 60-69 years, male 30.1
GTEX-WQUQ-2526-SM-4MVNO 60-69 years, male 28.7
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 28.2
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 28.1
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 28.1
GTEX-144GN-1126-SM-5LU33 50-59 years, male 27.4
GTEX-S341-1426-SM-4AD6U 40-49 years, female 27.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

66.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 66.9
FF:10014-101C5 62,83,84 years, mixed 66.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.