Fields »
ABOUT
HELP
BLOG
USP39

GENERAL INFORMATION

Gene name

 USP39

Gene description

 Ubiquitin specific peptidase 39

Protein class

 Enzymes
Predicted intracellular proteins

Predicted localization

 Intracellular

Number of transcripts

 8
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

 Evidence at protein level

DATA RELIABILITY

Reliability score

 Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
N/A
Hippocampus
N/A
N/A
Caudate
N/A
N/A
Cerebellum
N/A
N/A
Endocrine tissues
N/A
Bone marrow & immune system
N/A
Appendix
N/A
Tonsil
N/A
Spleen
N/A
Muscle tissues
N/A
Lung
N/A
Nasopharynx
N/A
N/A
Bronchus
N/A
N/A
Lung
N/A
Liver & gallbladder
N/A
Liver
N/A
Pancreas
N/A
Pancreas
N/A
Gastrointestinal tract
N/A
Oral mucosa
N/A
N/A
Esophagus
N/A
Stomach
N/A
Duodenum
N/A
Colon
N/A
Rectum
N/A
Kidney & urinary bladder
N/A
Kidney
N/A
Male tissues
N/A
Testis
N/A
Prostate
N/A
Female tissues
N/A
Breast
N/A
Vagina
N/A
N/A
Ovary
N/A
Placenta
N/A
Adipose & soft tissue
N/A
Soft tissue
N/A
N/A
Skin
N/A
Skin
N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

 USP39 (HGNC Symbol)

Synonyms

 CGI-21, SAD1, SNRNP65

Description

 Ubiquitin specific peptidase 39 (HGNC Symbol)

Entrez gene summary

Chromosome

 2

Cytoband

 p11.2

Chromosome location (bp)

 85602856 - 85649282

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000168883 (version 83.38)

Entrez gene

 10713

UniProt

 Q53GS9 (UniProt - Evidence at protein level)

neXtProt

 NX_Q53GS9

Antibodypedia

 USP39 antibodies

PROTEIN BROWSER
USP39-001
USP39-003
USP39-009
USP39-010
USP39-014
USP39-015
USP39-201
USP39-202

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
USP39-001
ENSP00000386864
ENST00000409470
Q53GS9 [Direct mapping]
U4/U6.U5 tri-snRNP-associated protein 2
Show all
Enzymes
   Peptidases
   Cysteine-type peptidases
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000245 [spliceosomal complex assembly]
GO:0005681 [spliceosomal complex]
GO:0006397 [mRNA processing]
GO:0007049 [cell cycle]
GO:0008270 [zinc ion binding]
GO:0008380 [RNA splicing]
GO:0016579 [protein deubiquitination]
GO:0036459 [ubiquitinyl hydrolase activity]
GO:0051301 [cell division]
Show all
 565 aa
65.4 kDa 		No 0
USP39-003
ENSP00000386572
ENST00000409025
B9A018 [Direct mapping]
U4/U6.U5 tri-snRNP-associated protein 2
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
GO:0016579 [protein deubiquitination]
GO:0036459 [ubiquitinyl hydrolase activity]
Show all
 536 aa
62 kDa 		No 0
USP39-009
ENSP00000312981
ENST00000323701
Q53GS9 [Direct mapping]
U4/U6.U5 tri-snRNP-associated protein 2
Show all
Enzymes
   Peptidases
   Cysteine-type peptidases
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000245 [spliceosomal complex assembly]
GO:0005681 [spliceosomal complex]
GO:0006397 [mRNA processing]
GO:0007049 [cell cycle]
GO:0008270 [zinc ion binding]
GO:0008380 [RNA splicing]
GO:0016579 [protein deubiquitination]
GO:0036459 [ubiquitinyl hydrolase activity]
GO:0051301 [cell division]
Show all
 565 aa
65.4 kDa 		No 0
USP39-010
ENSP00000386803
ENST00000409766
Q53GS9 [Direct mapping]
U4/U6.U5 tri-snRNP-associated protein 2
Show all
Enzymes
   Peptidases
   Cysteine-type peptidases
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000245 [spliceosomal complex assembly]
GO:0005681 [spliceosomal complex]
GO:0006397 [mRNA processing]
GO:0007049 [cell cycle]
GO:0008270 [zinc ion binding]
GO:0008380 [RNA splicing]
GO:0016579 [protein deubiquitination]
GO:0036459 [ubiquitinyl hydrolase activity]
GO:0051301 [cell division]
Show all
 488 aa
56.4 kDa 		No 0
USP39-014
ENSP00000396854
ENST00000448971
C9JIU2 [Direct mapping]
U4/U6.U5 tri-snRNP-associated protein 2
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
Show all
 129 aa
14.9 kDa 		No 0
USP39-015
ENSP00000392911
ENST00000442708
C9J0X5 [Direct mapping]
U4/U6.U5 tri-snRNP-associated protein 2
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
Show all
 113 aa
13 kDa 		No 0
USP39-201
ENSP00000396133
ENST00000450066
Q53GS9 [Direct mapping]
U4/U6.U5 tri-snRNP-associated protein 2
Show all
Enzymes
   Peptidases
   Cysteine-type peptidases
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000245 [spliceosomal complex assembly]
GO:0005681 [spliceosomal complex]
GO:0006397 [mRNA processing]
GO:0007049 [cell cycle]
GO:0008270 [zinc ion binding]
GO:0008380 [RNA splicing]
GO:0016579 [protein deubiquitination]
GO:0036459 [ubiquitinyl hydrolase activity]
GO:0051301 [cell division]
Show all
 462 aa
53.5 kDa 		No 0
USP39-202
ENSP00000484024
ENST00000613444
A0A087X1B2 [Direct mapping]
U4/U6.U5 tri-snRNP-associated protein 2
Show all
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0008270 [zinc ion binding]
GO:0016579 [protein deubiquitination]
GO:0036459 [ubiquitinyl hydrolase activity]
Show all
 487 aa
56.4 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.