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COLON - Expression summary

RNA expression
HPA:12.6TPM
GTEx:4.6RPKM
FANTOM5:85.5Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA052275

  

Endothelial cells

 High  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 
 

COLON - HPA RNA-seq

Average TPM

12.6
overview Male, age 54 Sample 1
TPM: 15.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 10.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 7.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 12.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 14
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 14.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 11.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 13.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 15.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 17
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 15.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 10.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.6

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 4.2
Samples: 149

Max RPKM: 10.3
Min RPKM: 0.8
Std RPKM: 1.4
Median RPKM: 4.1
GTEX-XV7Q-2226-SM-4BRVY 40-49 years, female 10.3
GTEX-1399R-2126-SM-5K7WZ 30-39 years, male 8.2
GTEX-ZAB5-1426-SM-5HL9D 50-59 years, male 8.2
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 7.4
GTEX-WYVS-1126-SM-4SOJX 40-49 years, female 7.1
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 7.1
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 7.0
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 6.6
GTEX-WHWD-1526-SM-4OORV 50-59 years, male 6.6
GTEX-XQ8I-2326-SM-4BOQC 50-59 years, male 6.6
Show all
Colon - Transverse
RPKM: 4.9
Samples: 196

Max RPKM: 8.9
Min RPKM: 1.3
Std RPKM: 1.3
Median RPKM: 4.8
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 8.9
GTEX-OHPM-1426-SM-3TW8Y 50-59 years, male 8.8
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 8.6
GTEX-P4QT-1426-SM-3NMCX 50-59 years, female 8.2
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 8.1
GTEX-R55G-1226-SM-48FDC 40-49 years, female 7.7
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 7.6
GTEX-Q734-1126-SM-48TZY 40-49 years, female 7.5
GTEX-QLQW-0426-SM-447A7 30-39 years, male 7.5
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 7.3
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

85.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 85.5
FF:10014-101C5 62,83,84 years, mixed 85.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.